View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_26 (Length: 392)
Name: NF12599_low_26
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 2911957 - 2911587
Alignment:
| Q |
14 |
atggacatcactcaactctgtgggctgagataggacacgtgtcagttacaacatcatggactgaaataagtaacaatgccacgttggccatttgcaaagt |
113 |
Q |
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| T |
2911957 |
atgggcataactcaactctgtgggctgagataggacacgtgtcagttacaacatcatggactgaaataagtaacaatgccacgttggccatttgcaaagt |
2911858 |
T |
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| Q |
114 |
ttacgtgtataatgatgtattta----gctttggttttggttgggattggaattaaatcaaagagtttgtatatgactgactatatttggaggctactgg |
209 |
Q |
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| T |
2911857 |
ttacgtgtataatgatgtatttaattagctttggttttggttgggattggaattaaatcaaagagtttgtatatgact----atatttggaggctactgg |
2911762 |
T |
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| Q |
210 |
atttaattgatatatgatcacccacgtagatgtatatgtataccactttgtactctattatccattgagtacgtatacagcttattgtttttataatatt |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2911761 |
atttaattgatatatgatgacccacgtagatgtatatgcataccactttgtactctattatccattgagtacgtatacagcttattgtttttataatatt |
2911662 |
T |
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| Q |
310 |
tgtgacgtggcagattatggatataaaaaattttggtaac--gatgagcaaatagtcactttggtctctgcttct |
382 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
2911661 |
tgtgacgtggcagattatggatataaaaaaatttggtaacatgatgagcaaatagtcactttggtctctggttct |
2911587 |
T |
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