View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_27 (Length: 388)
Name: NF12599_low_27
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 109 - 376
Target Start/End: Complemental strand, 28442902 - 28442627
Alignment:
| Q |
109 |
aaaataaggccaaatgcaggtgaat--------ctaggagaaagggagaatttgaagttggacaaaattagagctataagcatcttaagttcaagcatgg |
200 |
Q |
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| T |
28442902 |
aaaataaggccaaatgcaggtgaatgtatgtatctaggagaaagggagaatttgaagttggacaaaattagagctataagcatcttaagttcaagcatgg |
28442803 |
T |
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| Q |
201 |
ccaagttttgtccaagacaaactcttgggccaactccaaatggcatatatacgtgtggatgcgtacaagcaccggcagttccattagcaaatctctctgg |
300 |
Q |
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| T |
28442802 |
ccaagttttgtccaagacaaactcttgggccaactccaaatggcatatatacgtgtggatgagtacaagcaccagcagttccattagcaaatctctctgg |
28442703 |
T |
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| Q |
301 |
gttgaatttgtaggcatcttctccccaaatatcaggatttgtatgcaaacttagtatcaatatccaaaggccagtg |
376 |
Q |
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| T |
28442702 |
gttgaatttgtaggcatcttctccccaaatatcaggatttgtatgcaaacttagtatcaatatccaaaggccagtg |
28442627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 291
Target Start/End: Complemental strand, 28440611 - 28440447
Alignment:
| Q |
132 |
atctaggagaaagggagaatttgaagttggacaaaattagagctataagcatcttaagttcaagcatggccaag-----ttttgtccaagacaaactctt |
226 |
Q |
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| T |
28440611 |
atcttggagagagggagaaagagaagttagacaaaataagagccaagagcatcttaagttcaagcatagccaagccaagtgttgtccaagacaaactctt |
28440512 |
T |
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| Q |
227 |
gggccaactccaaatggcatatatacgtgtggatgcgtacaagcaccggcagttccattagcaaa |
291 |
Q |
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| T |
28440511 |
ggaccaactccaaatggcatatacacttgtggatgcttacaagcaccagcagttccattagcaaa |
28440447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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