View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_3 (Length: 827)
Name: NF12599_low_3
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 721; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 14 - 810
Target Start/End: Complemental strand, 28495611 - 28494821
Alignment:
| Q |
14 |
caaaggccaagtttatcactttggttaaaccaagggaatcatgaaatgggacaaagttctaattccctttatggttcttctggtttatctgagatagttc |
113 |
Q |
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| T |
28495611 |
caaaggccaagtttatcactttggttaaaccaagggaatcatgaaatgggacaaagttctaattccctttttggttcttctggtttatctgagatagttc |
28495512 |
T |
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| Q |
114 |
aaatgggaaatgctactactaataataataataat---gccttgatttgttcttcttcatcatcaatatttggtatacctgcttcaaattcaacatctgc |
210 |
Q |
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| T |
28495511 |
aaatgggaaatgctgctactaataataataataataatgccttgatttgttcttcttcatcatcaatgtttggtatacctgcttcaaattcaacatctgc |
28495412 |
T |
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| Q |
211 |
tgcaaatctttctctatcaaaacctgcttcttccggttctgttactgtttctgctacaccaatgtcagctactgctcttctgcaaaaagcagctcaaatg |
310 |
Q |
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| T |
28495411 |
tgcaaatctttctctatcaaaacctgcttcttccggttctgttactgtttctgctacaccaatgtcagctactgctcttctgcaaaaagcagctcaaatg |
28495312 |
T |
|
| Q |
311 |
ggttcaactagaagcaatactagtaatgataataacaacccttccatttttagttctagttttggtgtaatgacatcaccttcttcttctactagttcag |
410 |
Q |
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| T |
28495311 |
ggttcaactagaagcaatactagtaatgataataacaacccttccatttttagttctagttttggtgtaatgacatcaccttcttcttctactagttcag |
28495212 |
T |
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| Q |
411 |
ctatgttgggaaatagtagtgcaggtgcaggtgcagctgctaatgctaattatagctcaaatagtagtagttttgatcaattttttatgcatggaccaca |
510 |
Q |
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| T |
28495211 |
ctatgttgggaaatagtagtgcaggt------gcagctgctaatgctaattatagctcaaa---tagtagttttgatcaattttttatgcatggaccaca |
28495121 |
T |
|
| Q |
511 |
aagtgatcaacaagggaaattgaatattatgcaccatggtggttctggttctggttcaaactctatggatcaagtacaacatagtaatttgacaagagat |
610 |
Q |
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| T |
28495120 |
aagtgatcaacaagggaaattgaatattatgcaccatggtggttctggttctggttcaaactctatggatcaagtacaacatagtaatttgacaagagat |
28495021 |
T |
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| Q |
611 |
tttcttggtgtgagtggtggaggaagaactggtccacctcagtttctacctcaagagatagcaaaatttgcttcttccattcaattcacaggtaatcagt |
710 |
Q |
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| T |
28495020 |
tttcttggtgtgagtggtggaggaagaactggtccacctcagtttctacctcaagagatagcaaaatttgcttcttccattcaattcacaggtaatcagt |
28494921 |
T |
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| Q |
711 |
gaagttattatgttcacattgaagttgagggtttattgggaaattcattgaagtttttggtgtttgttgagaacttttttagtgtagtaggagtactttt |
810 |
Q |
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| T |
28494920 |
gaagttattatgttcaaattgaagttgagggtttattgggaaattcattgaagtttttggtgtttggtgagaacttgtttagtgtaataggagtactttt |
28494821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 40750153 - 40750216
Alignment:
| Q |
269 |
ccaatgtcagctactgctcttctgcaaaaagcagctcaaatgggttcaactagaagcaatacta |
332 |
Q |
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| T |
40750153 |
ccaatgtcagctactgcacttcttcagaaagcagctcaaataggttcaacaagaagcagtacta |
40750216 |
T |
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