View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_30 (Length: 378)
Name: NF12599_low_30
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 30472008 - 30472172
Alignment:
| Q |
1 |
ttgatcctaatatgtccaatttaattaccttcatccatccttaaatataaaacctccatccatcgatttgtggtttttgtggacggg-tttcgttcgagt |
99 |
Q |
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| T |
30472008 |
ttgatcctaatatgtccaatttaattaccttcatccatccttaaatataaaaccaccatccatcgatttgtggtttttgtggacgggttttcgttcgagt |
30472107 |
T |
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| Q |
100 |
agcagaagataagtgtttggatctcgtttggagatttgcaatggtggttgaagatttggctcaca |
164 |
Q |
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| T |
30472108 |
agtggaagataagtgtttggatctcgtttggagatttgcaatggtggttgaagatttggctcaca |
30472172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 262 - 375
Target Start/End: Original strand, 30472270 - 30472383
Alignment:
| Q |
262 |
agttgagtgatatttttgtcagtgatttgatgtccgaagtgtatggattttctgttggatgttccgcctatctacgtcaccttttacttgtttttgtgtt |
361 |
Q |
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| T |
30472270 |
agttgagtgatatttttgtcggtgatttgatgtccgaagtgtatggattttctgttgggtgttccgcctatctacgtcaccttttacttgtttttgtgtt |
30472369 |
T |
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| Q |
362 |
gttgatctctgctt |
375 |
Q |
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| T |
30472370 |
gttggtctctgctt |
30472383 |
T |
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