View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12599_low_32 (Length: 374)

Name: NF12599_low_32
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12599_low_32
NF12599_low_32
[»] chr3 (8 HSPs)
chr3 (154-370)||(24923430-24923646)
chr3 (171-370)||(24982042-24982241)
chr3 (175-370)||(24919877-24920072)
chr3 (171-369)||(25085035-25085233)
chr3 (175-370)||(24497250-24497445)
chr3 (160-369)||(31825533-31825742)
chr3 (165-369)||(21584578-21584782)
chr3 (1-118)||(24923275-24923392)
[»] chr7 (4 HSPs)
chr7 (172-369)||(10575384-10575581)
chr7 (177-363)||(39954838-39955024)
chr7 (224-369)||(354401-354547)
chr7 (163-369)||(10580784-10580973)
[»] chr8 (1 HSPs)
chr8 (159-369)||(14261007-14261217)
[»] chr2 (1 HSPs)
chr2 (185-342)||(41027596-41027753)
[»] chr4 (3 HSPs)
chr4 (185-348)||(22898571-22898734)
chr4 (185-348)||(22950239-22950402)
chr4 (200-363)||(53328717-53328880)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 154 - 370
Target Start/End: Original strand, 24923430 - 24923646
Alignment:
Q  154 agtgtttcttcttcatattcttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctc 253  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  24923430 agtgtttcttcttcatattcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctc 24923529  T
Q  254 ctagcgtgctcagtgtatgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctct 353  Q
    || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923530 cttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctct 24923629  T
Q  354 taacaccacctcttctt 370  Q
    |||||||||||||||||    
T  24923630 taacaccacctcttctt 24923646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 171 - 370
Target Start/End: Complemental strand, 24982241 - 24982042
Alignment:
Q  171 ttcttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgta 270  Q
    |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  24982241 ttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgta 24982142  T
Q  271 tgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttctt 370  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24982141 tgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttctt 24982042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 175 - 370
Target Start/End: Original strand, 24919877 - 24920072
Alignment:
Q  175 tcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgta 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||     
T  24919877 tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtc 24919976  T
Q  275 actgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttctt 370  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  24919977 acagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttctt 24920072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 171 - 369
Target Start/End: Complemental strand, 25085233 - 25085035
Alignment:
Q  171 ttcttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgta 270  Q
    |||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25085233 ttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgta 25085134  T
Q  271 tgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttct 369  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  25085133 tgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttct 25085035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 175 - 370
Target Start/End: Original strand, 24497250 - 24497445
Alignment:
Q  175 tcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgta 274  Q
    |||||| || || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24497250 tcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgta 24497349  T
Q  275 actgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttctt 370  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24497350 actgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttctt 24497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 160 - 369
Target Start/End: Original strand, 31825533 - 31825742
Alignment:
Q  160 tcttcttcatattcttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcg 259  Q
    |||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||    
T  31825533 tcttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcg 31825632  T
Q  260 tgctcagtgtatgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac 359  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||    
T  31825633 tgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacac 31825732  T
Q  360 cacctcttct 369  Q
    ||||||||||    
T  31825733 cacctcttct 31825742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 165 - 369
Target Start/End: Original strand, 21584578 - 21584782
Alignment:
Q  165 ttcatattcttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctc 264  Q
    ||||| |||||||||| ||||||||||| || |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| || |||||    
T  21584578 ttcatcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctc 21584677  T
Q  265 agtgtatgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacct 364  Q
    |||||| ||||| ||||||||||| |||||||||||||| ||||| |  || ||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  21584678 agtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacct 21584777  T
Q  365 cttct 369  Q
    |||||    
T  21584778 cttct 21584782  T

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Target: chr3; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 24923275 - 24923392
Alignment:
Q  1 tttcaatttcaaactatgtcaaattgaatatccttcaatctcaccgagaattacaagtaagatatcaacctaaatatcataacaagaattccagattaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24923275 tttcaatttcaaactatgtcaaattgaatatccttcaatctcaacgaaaattacaagtaagatattaacctaaatatcataacaagaattccagattaga 24923374  T
Q  101 atcgaatattcaaattac 118  Q
    |||| |||||||||||||    
T  24923375 atcgcatattcaaattac 24923392  T

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Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 172 - 369
Target Start/End: Complemental strand, 10575581 - 10575384
Alignment:
Q  172 tcttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtat 271  Q
    ||||||||||||||| ||||||||||||||||| || ||||| |  || || ||||||||||| || |||||||| |||||||| || |||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  272 gtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttct 369  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||||||    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttct 10575384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 177 - 363
Target Start/End: Original strand, 39954838 - 39955024
Alignment:
Q  177 aaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaac 276  Q
    |||||||||| || ||||| || |||||||||||||| | |||||| |||||||||||||| || ||||| ||||||||||| ||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  277 tgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 363  Q
     ||||||||||| |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||| ||||||||    
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc 39955024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 224 - 369
Target Start/End: Complemental strand, 354547 - 354401
Alignment:
Q  224 acaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctgg 323  Q
    ||||||||||| || |||| |||||||||||| || ||||||||||| ||||| ||||||| |||  |||||| |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  324 tttcttcataga-tcaaaccactgattctcttaacaccacctcttct 369  Q
    |||| ||||||| | ||||||||||| ||||| ||||||||||||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttct 354401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 369
Target Start/End: Complemental strand, 10580973 - 10580784
Alignment:
Q  163 tcttcatattcttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgc 262  Q
    ||||||| ||||||| ||||| || ||||||||||||||||||||            ||| ||||||||||| || |||| |||||||||     | |||    
T  10580973 tcttcatcttcttcatccaccaaaaccatagagggttcttccctg------------ataaacaacatccatagcagtcagagtcttcct-----catgc 10580891  T
Q  263 tcagtgtatgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccac 362  Q
    |||||||| ||||| |||||| ||||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||| ||||||     
T  10580890 tcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacaccaa 10580791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 159 - 369
Target Start/End: Original strand, 14261007 - 14261217
Alignment:
Q  159 ttcttcttcatattcttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagc 258  Q
    |||||| |||| |||||||||| ||||| ||||| |  || ||||| || |||||||| ||||| ||||||||||| || || || ||||||||||| ||    
T  14261007 ttcttcatcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgc 14261106  T
Q  259 gtgctcagtgtatgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaaca 358  Q
     || ||||| || ||||| ||||| |  || |||||||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||| |||    
T  14261107 atgttcagtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcaca 14261206  T
Q  359 ccacctcttct 369  Q
    || ||||||||    
T  14261207 cctcctcttct 14261217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 342
Target Start/End: Complemental strand, 41027753 - 41027596
Alignment:
Q  185 aatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac 284  Q
    |||||||| || || ||||| || |||||||| ||||| ||||||||||| || || |||||||| |||||||||||||| ||||| ||||| |||||||    
T  41027753 aatccataaagagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcac 41027654  T
Q  285 gaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaacc 342  Q
    |||| ||||||||||| ||||||||||| || || |  || ||||| |||||||||||    
T  41027653 gaataacattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc 41027596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 348
Target Start/End: Complemental strand, 22898734 - 22898571
Alignment:
Q  185 aatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac 284  Q
    ||||| || |||||||||||||| ||||| |  ||||| || |||||||| || || || |||||||| ||||||||||||||||| || || ||||| |    
T  22898734 aatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctc 22898635  T
Q  285 gaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 348  Q
     ||| ||||||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22898634 taatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22898571  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 348
Target Start/End: Complemental strand, 22950402 - 22950239
Alignment:
Q  185 aatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac 284  Q
    ||||| || |||||||||||||| ||||| |  ||||| || |||||||| || || || |||||||| ||||||||||||||||| || || ||||| |    
T  22950402 aatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctc 22950303  T
Q  285 gaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 348  Q
     ||| ||||||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22950302 taatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22950239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 363
Target Start/End: Complemental strand, 53328880 - 53328717
Alignment:
Q  200 cttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacgaatgacattctcca 299  Q
    |||||||||||||| | ||| || ||||||||||| || || |||||||| |  | ||| ||||| |||||||| || ||||||||||| |||||||| |    
T  53328880 cttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgacagcatcacgaatcacattctcaa 53328781  T
Q  300 agaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 363  Q
      |||||||| |  || || |  |||||||||||||| || |||||||| | ||| ||||||||    
T  53328780 gaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 53328717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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