View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_33 (Length: 363)
Name: NF12599_low_33
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 2 - 284
Target Start/End: Original strand, 20046674 - 20046957
Alignment:
| Q |
2 |
caagctacatgtaaagataattcaaaacacctaataaatatgctttctacttgttat-gccgcagctggtaatcgctgggcaaattttgttgcagttgat |
100 |
Q |
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| T |
20046674 |
caagctacatgtaaagataattcaaaacacctaataaatatgctttctacttgttatagccgcagctggtaatcgctgggcaaattttgttgcagttgat |
20046773 |
T |
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| Q |
101 |
tattacaaggtaaaatctcctactttgttttattgtaggttggccgacattttatatatcttgacatccaatgtcatttgaaatttgatgcagagaagtg |
200 |
Q |
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| T |
20046774 |
tattacaaggtaaaatcttctactttgttttattgtaggttggccgacattttatatatcttgacatccaatgtcatttgaaatttgatgcagagaagtg |
20046873 |
T |
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| Q |
201 |
acggtggagggtcatttcaagctgtagatatgttaaatgggaaattaatgtgcggatgtgatgatgtgcatgcttgtatggtaa |
284 |
Q |
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| T |
20046874 |
acggtggagggtcatttcaagctgtagatatgttaaatgggaaattaatgtgtggatgtgatgatgtgcatgcttgtatggtaa |
20046957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 20047310 - 20047373
Alignment:
| Q |
285 |
aaattatggatatatgttttttgaaaagaaaatcatagatactttttaacgttaaaatcatagt |
348 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20047310 |
aaatgatggatatttgttttttgaaaagaaaatcatagatactttttaacgttaaaatcgtagt |
20047373 |
T |
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