View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_37 (Length: 331)
Name: NF12599_low_37
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 2943015 - 2942709
Alignment:
| Q |
10 |
aagcaaaggtgcataggacttcgcgggtcctgcttgtcttgggattttgtttattggacttctagtctgtccgaaactattttgaatttcattttattnn |
109 |
Q |
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| T |
2943015 |
aagccaaggtgcataggatttcgcgggtcctgcttgtcttgggattttgtttattggacttctagtctatccgaaactattttgaatttcattttattaa |
2942916 |
T |
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| Q |
110 |
nnnnnnnn--ctgttttaagcactaaattcatggttccttgattatagggaagtgacaatgttgtgtgctcttgccacactaaattatgaagattatttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2942915 |
aaaaaaaaaactgttttaagcactaaattcatggttccttgattatagggaagtgacaatgttgtgtgctcttgccacactaaattatgaagattatttt |
2942816 |
T |
|
| Q |
208 |
agtaagcaatttattttggagggtgaagtatatcaaattatgaacgagttgggatcctttctatttttccattgtaaaatgctaaccaaggtattgggta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2942815 |
agtaagcaatttattttggagggtgaagtatatcaaattatgaacgagttgggatcctttctatttttccattgtaaaatgctaaccaaggtattgggta |
2942716 |
T |
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| Q |
308 |
agaaaat |
314 |
Q |
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||||||| |
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| T |
2942715 |
agaaaat |
2942709 |
T |
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