View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_38 (Length: 324)
Name: NF12599_low_38
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 40115376 - 40115669
Alignment:
| Q |
19 |
ccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgcataa |
118 |
Q |
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| T |
40115376 |
ccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagaaaaaaattcaatggatatagggttagttttgcataa |
40115475 |
T |
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| Q |
119 |
atgtgagacagacaataacttgcaagtgatattcggaacatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagta |
218 |
Q |
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| T |
40115476 |
atgtgagacagacaataacttgcaagtgatatttggaacatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagta |
40115575 |
T |
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| Q |
219 |
tgagtaatgggaagtccagtaccatcacctatggtaattttgtctgagccatgatagggagcagtaaggtgaagatcatcaagagtatcagtga |
312 |
Q |
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| T |
40115576 |
tgagtaatgggaagtccagtaccatcacctatggtaattttgtctgagccatgatagggagcagtaaggtgcagatcatcaagagtattagtga |
40115669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 9007211 - 9007300
Alignment:
| Q |
22 |
tatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttt |
111 |
Q |
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| T |
9007211 |
tatgcagtcctttgaggagaggctcctttgtcttcaaatccttcaccaaaaaacaatcagaaaaaaattcaatggaaatagggttagttt |
9007300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 42360941 - 42361002
Alignment:
| Q |
19 |
ccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca |
80 |
Q |
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| T |
42360941 |
ccttatgcattccttttataagaggagcccttgtcttcaagtcctttaccaagtaataatca |
42361002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 3017259 - 3017100
Alignment:
| Q |
19 |
ccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgcataa |
118 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||| |||||| || || ||||||| |||||||| |
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| T |
3017259 |
ccttatgcaatccttttagaagaggagcccttgtcttcaagtcctttaccaagtaataatcatgaaagaattcaatagaaattgggttagtcttgcataa |
3017160 |
T |
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| Q |
119 |
atgtgagacagacaataacttgcaagtgatattcggaacatgaagaactttatgaaggtg |
178 |
Q |
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| T |
3017159 |
gttggagacagataataatttgcaagaaatatgagggacatgaaggactttgggaaggtg |
3017100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 9038424 - 9038459
Alignment:
| Q |
46 |
cccttgtcttcaaatccttcaccaaaaaataatcag |
81 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
9038424 |
cccttgtcttcaaatccttcaccaaaaaaaaatcag |
9038459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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