View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_39 (Length: 323)
Name: NF12599_low_39
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 9967361 - 9967193
Alignment:
| Q |
1 |
taaaatgactcataaaaaattgcatgtgatatcttagttatattcacatgtgttttagctatacaagttatcacgtgcgctttttaatgagttgtttaac |
100 |
Q |
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| T |
9967361 |
taaaatgactca--aaaaattgcatgtgatatcttagttatattcacatgtgttttagctatacaagttatcacgtgcgctttttaatgagttgtttaat |
9967264 |
T |
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| Q |
101 |
ttcagttatgcaacattagatacaaattgcaaagaaaaatcacattcgtacgttagtgttgcaaaattaga |
171 |
Q |
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| T |
9967263 |
ttcagttatgcaacattagatacaaattgcaaagaaaaatcacattcgtacgttagtgttgcaaaattaga |
9967193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 9959917 - 9960021
Alignment:
| Q |
13 |
taaaaaattgcatgtgatatcttagttatattcacatgtgttttagctatacaagttatcacgtgcgctttttaatgagttgtttaacttcagttatgca |
112 |
Q |
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| T |
9959917 |
taaaaaattgcacgtgatatcttaa----attcacacgcgttttagttatgcaagttatcacgtgcgctttttaatgagttgtttaatttcaattatgca |
9960012 |
T |
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| Q |
113 |
acattagat |
121 |
Q |
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| T |
9960013 |
acattagat |
9960021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 9974176 - 9974093
Alignment:
| Q |
38 |
ttatattcacatgtgttttagctatacaagttatcacgtgcgctttttaatgagttgtttaacttcagttatgcaacattagat |
121 |
Q |
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| T |
9974176 |
ttatattcacacgcgttttagttatgcaagttatcacgtgcgctttttaatgagtcgtttaatttcagttatgcaacattagat |
9974093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 9962332 - 9962280
Alignment:
| Q |
252 |
ttatctctataaaacggatccataagcctctatcattgttatttggccatttc |
304 |
Q |
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| T |
9962332 |
ttatctctataaaacggatccataagcctctatcattgttatttggccatttc |
9962280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 9983167 - 9983096
Alignment:
| Q |
233 |
ccataaacaacaagaccacttatctctataaaacggatccataagcctctatcattgttatttggccatttc |
304 |
Q |
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| T |
9983167 |
ccataaacaataagaccacttatctctataaaacggatccatgaacctttataattgtcatttggccatttc |
9983096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 9868821 - 9868739
Alignment:
| Q |
64 |
caagttatcacgtgcgctttttaatgagttgtttaacttcagttatgcaacattagatacaaattgcaaagaaaaatcacatt |
146 |
Q |
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| T |
9868821 |
caagttatcacgtgtactttttaatgagtcatttaatttcagttctgcaacatcatatacaaattgccaataaaaatcacatt |
9868739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 9983232 - 9983182
Alignment:
| Q |
186 |
tttcacacttgatattggaatggcagtcccaccattgagaacctttgccat |
236 |
Q |
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| T |
9983232 |
tttcacacttgatattggaatggcaatcccaccattgagcacctttgccat |
9983182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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