View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_4 (Length: 771)
Name: NF12599_low_4
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 27 - 719
Target Start/End: Complemental strand, 16910955 - 16910263
Alignment:
| Q |
27 |
agagatatagaattaaggtttggagtagaaagcacaactttgtaacgttccggagcggtaaaacctatggacaaactatatagcttggaattagatatgc |
126 |
Q |
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| T |
16910955 |
agagagatagaattaaggtttggagtagaaagcacaactttgtaacgttccggaggggtacaacctatgcacaaactagatagcttggaattagatatgc |
16910856 |
T |
|
| Q |
127 |
agaggacagttgcattgtgttgtagacaccaacagtcaagaaccaaggtgcttaacatcttaaaatttgaaaagggttccacaatgccattatcatttgc |
226 |
Q |
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| T |
16910855 |
agaggacagttgcattgtgttgtagagaccaacagttaaggaccaaagtgcttaacatcttaaaatttgaaaagggttccacaatgccattgtcatttgc |
16910756 |
T |
|
| Q |
227 |
aacaaaagtgacagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatcatccaacggacaccccaaaataaaagcttt |
326 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16910755 |
aacaaaagtggcagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatcatccaagggacaccccaaaataaaagcttt |
16910656 |
T |
|
| Q |
327 |
agatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaattcaaataaagttcaagagtgaaattctcgacattatgtg |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16910655 |
agatgtgtcaaagatttgcaagaaaagatgctagggcgcaaagtgtaaccgggtttgaaattcaaataaagttcaagtgtgaaattctcgacattatgtg |
16910556 |
T |
|
| Q |
427 |
acatcgcatatttcatgaccatgtccacaagttcaggttcaacgcctccttcatttcttaaaacaatatcttgtaaagaaattgatttgtcacgatgaga |
526 |
Q |
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|||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16910555 |
acatagcatatttcatgaccgcgtccacaagtttaggttcaacgcctctttcatttcttaaaacaatatcttgtaaagaaattgatttgtcacgatgaga |
16910456 |
T |
|
| Q |
527 |
cagaactgaaaacacaaattgattataattcggtaagccacgagcgaatactgaattattcaatgcaagagtcgtgactcttcgccaaagtgtcttccat |
626 |
Q |
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| T |
16910455 |
cagaactgaaaacacaaattgattataattgggtaagccacgagcgaatactgaattattcaatgcaagagtagtgactcttcgccaaagtgtcttccat |
16910356 |
T |
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| Q |
627 |
ctagtagacaatacacaagtttgaacaacttgttttgtgtccataaacttcatcatattgagcaaaacagaatcacacaagtcactaagccgg |
719 |
Q |
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| T |
16910355 |
ctagtagacaatacacaagtttgaacaacttgttttgtgtccataaacttcattatattgagcaaaacagaatcacacaagtcactaagccgg |
16910263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 50790290 - 50790383
Alignment:
| Q |
319 |
aaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaattcaaataaagttcaagagtgaaatt |
412 |
Q |
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||||||| ||| ||||||||||| |||||||||||||||||| |||| |||||||| | || |||||| ||| || ||||||||| ||||| |
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| T |
50790290 |
aaagcttaagacatgtcaaagattgacaagaaaagatgctagggtgcaatgtgtaaccgcgcttaaaattcgaatcaacttcaagagttaaatt |
50790383 |
T |
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