View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_46 (Length: 282)
Name: NF12599_low_46
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 88 - 269
Target Start/End: Original strand, 53100742 - 53100923
Alignment:
| Q |
88 |
tctcgcgggagttaagtcccgctggctctaagattaaacctgcaactattatataattgataccatgttatggacccattattttcctttctctaggatt |
187 |
Q |
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| T |
53100742 |
tctcacgggagttaagtcccgctggctctaagattaaacctgcaactattatataattgataccatgttatggacccattattttcctttctctaggatt |
53100841 |
T |
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| Q |
188 |
agcttttctaacctttcaccaaaatcgaaaaaacattggtgggacttggacccacaagttagtttgatttttatataccttc |
269 |
Q |
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| T |
53100842 |
agcttttctaacctttcaccaaaatcgaaaaaacattggtgggacttggacccacaaattagtttgatttttatataccttc |
53100923 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 48000854 - 48000905
Alignment:
| Q |
160 |
gacccattattttcctttctctaggattagcttttctaacctttcaccaaaa |
211 |
Q |
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| T |
48000854 |
gacccattattttccattctctaggattagcttttctaacctttcaccaaaa |
48000905 |
T |
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