View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_5 (Length: 641)
Name: NF12599_low_5
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 105 - 636
Target Start/End: Complemental strand, 31227334 - 31226803
Alignment:
| Q |
105 |
caaagtaaaataccatccttataactagtcatgtttagagagagagcacacttcaacttttgtgtcttagcctttaagctttataatcttctcaagaatt |
204 |
Q |
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| T |
31227334 |
caaagtaaaataccatccttataactagtcatgtttacagagagagcacacttcaacttttgtgtcttaacctttaagctttataatcttctcaagaatt |
31227235 |
T |
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| Q |
205 |
atcaataaccatcgtttgttgacttccttcaacgatctcatcccctcaactatttgtagtgtacccttcctggtaatattgattgtactagtgatttata |
304 |
Q |
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| T |
31227234 |
atcaacaaccattgtttgttgacttcattcaacgatctcatcacctcaactatttgtagtgtactcttcctgttaatattgattgtactagtgatttata |
31227135 |
T |
|
| Q |
305 |
agatttggatagtgaagccaacataattaaaatttgctttcctcttttatatattttctctaacattcataattccagacattatctcattaaaattatt |
404 |
Q |
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| T |
31227134 |
agatttggatagtgaagccaacataattaaaatttgctttcctcttttatatattttctctaacattcataattccagacattatctcattaaaattatt |
31227035 |
T |
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| Q |
405 |
aatatgattaaacacattacttcatcttccaaatttagcaaatacatcctcattttcttcatcaataaattggaaaacttggttgacgcaaacatgcatc |
504 |
Q |
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| T |
31227034 |
aatatgattaaacacattacttcatcttccaaatttagcaaatacatcctcattttcttcatcaataaattggaaaacttggttgacgcaaacatgcatc |
31226935 |
T |
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| Q |
505 |
gtaaaaaatcctacaatttctctggatatgtttagttcaacactatctctttaatctttagagcaagtttcaataaaattatgcccattgtctcttttta |
604 |
Q |
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| T |
31226934 |
gtaaaaaatcctacaatttctctggatatgtttagttcaacactatctctttaatctttagagcaagtttcaataaaattatgcccattgtctcttttta |
31226835 |
T |
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| Q |
605 |
tgttgtactcaactttgaatctttcatctcac |
636 |
Q |
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| T |
31226834 |
tgttgtactcaactttgaatctttcatctcac |
31226803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 374 - 508
Target Start/End: Original strand, 8233407 - 8233541
Alignment:
| Q |
374 |
taattccagacattatctcattaaaattattaatatgattaaacacattacttcatcttccaaatttagcaaatacatcctcattttcttcatcaataaa |
473 |
Q |
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|||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||| |
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| T |
8233407 |
taattctatacattatctctttaaaattattaatatgattaaacacattacatcatcttccaaatttagcaactacaaactcattttcttcgtcaataaa |
8233506 |
T |
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| Q |
474 |
ttggaaaacttggttgacgcaaacatgcatcgtaa |
508 |
Q |
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| T |
8233507 |
ttggaaaacttggttgacgcaaacatacatcgtaa |
8233541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 24521087 - 24521006
Alignment:
| Q |
390 |
ctcattaaaattattaatatgattaaacacatta-cttcatcttccaaatttagcaaatacatcctcattttcttcatcaat |
470 |
Q |
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||||||||| ||| ||||||||| |||||||||| |||||||||||| |||| | | |||| ||||||||| |||||||| |
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| T |
24521087 |
ctcattaaacttactaatatgatcaaacacattaccttcatcttccagctttaacgagtacaagctcattttcatcatcaat |
24521006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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