View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_50 (Length: 251)
Name: NF12599_low_50
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 26950194 - 26949978
Alignment:
| Q |
12 |
cgttcactgatcaaagcagaaattacttcttttttaatggttgaaagcacaagaggacacgttctgaagtaaaaattagaggataattgagctgaaattg |
111 |
Q |
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| T |
26950194 |
cgttcattgatcaaagcagaaattacttcttttttaatggttgaaagcacaagaggacacgttctgaagtaaaaattagaggataattgagctgaaattg |
26950095 |
T |
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| Q |
112 |
tgccaataaggcaaaagagtacaataaaatgaactttggtgattggaaggttcataatggcaaatgcaatttatacttcaagaaagaattatttattaga |
211 |
Q |
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| T |
26950094 |
tgccaataaggcaaaagagtacaataaaatgaactttggtgattggaaggttcataatggcaaatgcaatttatacttcaagaaagaattatttattaga |
26949995 |
T |
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| Q |
212 |
agatgaagagaaatgag |
228 |
Q |
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| T |
26949994 |
agatgaagagaaatgag |
26949978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 26959691 - 26959621
Alignment:
| Q |
38 |
ttcttttttaatggttgaaagcacaagaggacacgttctgaagtaaaaattagaggataattgagctgaaa |
108 |
Q |
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|||| |||||||||||||||||||| || ||||||| | ||||||||| || ||| ||||||||||||| |
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| T |
26959691 |
ttctcttttaatggttgaaagcacatcagaacacgttgttgagtaaaaatcagtggacaattgagctgaaa |
26959621 |
T |
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