View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12599_low_54 (Length: 244)

Name: NF12599_low_54
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12599_low_54
NF12599_low_54
[»] chr3 (41 HSPs)
chr3 (1-133)||(13434135-13434271)
chr3 (123-237)||(10293596-10293711)
chr3 (133-237)||(20968971-20969075)
chr3 (135-189)||(47871121-47871175)
chr3 (135-224)||(18875155-18875245)
chr3 (134-188)||(9027033-9027087)
chr3 (134-184)||(42627550-42627600)
chr3 (134-188)||(42672977-42673031)
chr3 (133-224)||(10293873-10293965)
chr3 (138-191)||(26540694-26540747)
chr3 (133-188)||(3353126-3353181)
chr3 (133-188)||(24485460-24485515)
chr3 (133-188)||(42673296-42673351)
chr3 (134-188)||(47666335-47666390)
chr3 (130-187)||(8314008-8314066)
chr3 (123-188)||(48159885-48159951)
chr3 (134-190)||(17372297-17372354)
chr3 (135-188)||(40848521-40848574)
chr3 (133-186)||(44008403-44008456)
chr3 (135-187)||(8315083-8315135)
chr3 (135-188)||(21895657-21895712)
chr3 (133-187)||(1927770-1927825)
chr3 (125-188)||(9026726-9026789)
chr3 (202-237)||(18874957-18874992)
chr3 (135-224)||(20968718-20968808)
chr3 (138-191)||(1101087-1101141)
chr3 (138-188)||(1928434-1928484)
chr3 (138-187)||(3644538-3644588)
chr3 (138-188)||(14015964-14016014)
chr3 (134-188)||(21896511-21896565)
chr3 (130-187)||(22429153-22429211)
chr3 (135-188)||(40848961-40849015)
chr3 (135-188)||(47870823-47870877)
chr3 (134-224)||(13657444-13657536)
chr3 (135-187)||(18874882-18874935)
chr3 (135-187)||(45060872-45060925)
chr3 (135-187)||(53766580-53766633)
chr3 (142-186)||(3353553-3353597)
chr3 (133-188)||(27238900-27238956)
chr3 (133-188)||(48160333-48160389)
chr3 (133-185)||(53688306-53688358)
[»] scaffold0110 (2 HSPs)
scaffold0110 (135-237)||(45758-45860)
scaffold0110 (135-224)||(45537-45626)
[»] scaffold0319 (2 HSPs)
scaffold0319 (134-237)||(6648-6751)
scaffold0319 (135-191)||(6394-6451)
[»] scaffold0802 (2 HSPs)
scaffold0802 (124-237)||(1371-1485)
scaffold0802 (124-224)||(1107-1208)
[»] chr8 (48 HSPs)
chr8 (133-237)||(41662354-41662459)
chr8 (132-232)||(765731-765832)
chr8 (135-232)||(12281124-12281222)
chr8 (132-237)||(43245868-43245974)
chr8 (133-237)||(15156136-15156241)
chr8 (127-191)||(16929239-16929304)
chr8 (135-225)||(13936723-13936813)
chr8 (133-230)||(39724006-39724104)
chr8 (135-230)||(9823319-9823415)
chr8 (135-191)||(43246173-43246230)
chr8 (125-188)||(74676-74739)
chr8 (133-230)||(13027239-13027337)
chr8 (135-230)||(13026635-13026731)
chr8 (132-230)||(3463903-3464002)
chr8 (133-188)||(22851388-22851444)
chr8 (133-188)||(24473341-24473397)
chr8 (139-191)||(43162536-43162588)
chr8 (133-191)||(12281423-12281482)
chr8 (135-224)||(15155883-15155973)
chr8 (135-237)||(16928942-16929043)
chr8 (126-188)||(37752075-37752138)
chr8 (133-191)||(37752413-37752472)
chr8 (135-181)||(9465607-9465653)
chr8 (138-187)||(15042148-15042198)
chr8 (133-191)||(34313763-34313820)
chr8 (133-191)||(43162232-43162290)
chr8 (133-186)||(16169172-16169225)
chr8 (142-190)||(7127660-7127708)
chr8 (133-188)||(9822746-9822802)
chr8 (133-188)||(23123336-23123392)
chr8 (201-237)||(37752181-37752217)
chr8 (202-237)||(74936-74971)
chr8 (135-174)||(767720-767759)
chr8 (122-188)||(9623882-9623949)
chr8 (137-191)||(23123514-23123567)
chr8 (135-224)||(33747984-33748073)
chr8 (127-188)||(34498114-34498176)
chr8 (137-191)||(37670253-37670306)
chr8 (135-188)||(3463642-3463694)
chr8 (135-184)||(6092777-6092825)
chr8 (135-224)||(18020053-18020140)
chr8 (138-186)||(22786843-22786892)
chr8 (135-191)||(41662107-41662164)
chr8 (133-184)||(3307336-3307388)
chr8 (137-188)||(15442765-15442817)
chr8 (137-188)||(25438794-25438846)
chr8 (133-188)||(37397145-37397201)
chr8 (135-186)||(41662521-41662573)
[»] chr2 (38 HSPs)
chr2 (125-237)||(30190913-30191026)
chr2 (138-237)||(40469680-40469780)
chr2 (135-237)||(20347415-20347518)
chr2 (135-232)||(24832331-24832429)
chr2 (124-232)||(11883612-11883721)
chr2 (135-237)||(6171408-6171510)
chr2 (138-229)||(32673102-32673193)
chr2 (135-230)||(2639440-2639536)
chr2 (133-224)||(11883890-11883982)
chr2 (135-230)||(26841587-26841683)
chr2 (133-230)||(26842196-26842294)
chr2 (137-230)||(15321394-15321486)
chr2 (135-188)||(18296693-18296747)
chr2 (135-230)||(2638820-2638916)
chr2 (133-186)||(6171154-6171207)
chr2 (136-225)||(18296077-18296167)
chr2 (133-232)||(43495562-43495660)
chr2 (138-230)||(7591204-7591297)
chr2 (138-231)||(17345736-17345828)
chr2 (137-191)||(18055050-18055103)
chr2 (138-191)||(43495481-43495535)
chr2 (133-224)||(30191189-30191281)
chr2 (133-186)||(40221311-40221364)
chr2 (133-224)||(40469425-40469517)
chr2 (133-188)||(17850976-17851032)
chr2 (135-191)||(26737482-26737537)
chr2 (133-188)||(26737781-26737837)
chr2 (135-186)||(29230282-29230334)
chr2 (135-188)||(5378661-5378715)
chr2 (135-188)||(37720204-37720258)
chr2 (135-188)||(41790912-41790966)
chr2 (138-186)||(29343584-29343633)
chr2 (135-186)||(6495723-6495775)
chr2 (133-188)||(7664673-7664729)
chr2 (136-188)||(16911269-16911321)
chr2 (135-191)||(17346032-17346088)
chr2 (136-188)||(18750126-18750178)
chr2 (133-188)||(26692820-26692876)
[»] chr5 (36 HSPs)
chr5 (135-237)||(25115757-25115860)
chr5 (135-237)||(25174849-25174952)
chr5 (133-237)||(18433013-18433118)
chr5 (132-230)||(18817569-18817668)
chr5 (135-237)||(26020450-26020553)
chr5 (134-188)||(34577164-34577218)
chr5 (132-237)||(34576864-34576968)
chr5 (135-188)||(37610202-37610255)
chr5 (135-188)||(37780320-37780373)
chr5 (135-188)||(22428934-22428987)
chr5 (135-188)||(22429196-22429249)
chr5 (135-191)||(33324835-33324892)
chr5 (136-188)||(22729440-22729492)
chr5 (138-186)||(31569910-31569958)
chr5 (135-224)||(25175115-25175205)
chr5 (138-188)||(9665560-9665609)
chr5 (133-187)||(9665828-9665881)
chr5 (135-224)||(18433281-18433370)
chr5 (135-188)||(18816952-18817006)
chr5 (133-187)||(23011077-23011131)
chr5 (135-230)||(11350808-11350903)
chr5 (135-188)||(41383167-41383220)
chr5 (135-190)||(5187828-5187884)
chr5 (138-188)||(11351427-11351478)
chr5 (141-191)||(16726084-16726135)
chr5 (135-189)||(25116060-25116115)
chr5 (135-186)||(43464194-43464245)
chr5 (135-188)||(12498567-12498621)
chr5 (135-188)||(12498928-12498982)
chr5 (203-237)||(22429176-22429210)
chr5 (133-188)||(22629524-22629581)
chr5 (135-188)||(26571164-26571218)
chr5 (138-188)||(43463759-43463809)
chr5 (133-186)||(12441040-12441093)
chr5 (133-174)||(12441326-12441366)
chr5 (133-185)||(22729006-22729058)
[»] chr1 (49 HSPs)
chr1 (135-237)||(47955306-47955409)
chr1 (137-191)||(17518599-17518653)
chr1 (135-191)||(13589656-13589712)
chr1 (133-230)||(6002235-6002333)
chr1 (134-237)||(41082908-41083011)
chr1 (135-230)||(49284409-49284505)
chr1 (133-189)||(20371352-20371408)
chr1 (133-188)||(48190769-48190825)
chr1 (133-188)||(27172114-27172169)
chr1 (138-191)||(1176839-1176893)
chr1 (135-188)||(8108993-8109047)
chr1 (133-187)||(20480613-20480667)
chr1 (134-184)||(49317751-49317801)
chr1 (132-188)||(6703894-6703951)
chr1 (135-188)||(9347551-9347604)
chr1 (124-188)||(48191355-48191420)
chr1 (133-188)||(21687023-21687079)
chr1 (135-191)||(41083208-41083264)
chr1 (133-188)||(50615621-50615676)
chr1 (133-188)||(50623449-50623504)
chr1 (135-188)||(4692433-4692487)
chr1 (135-224)||(17518303-17518392)
chr1 (138-190)||(1177016-1177069)
chr1 (135-188)||(20480168-20480221)
chr1 (135-224)||(22149403-22149490)
chr1 (133-188)||(9347124-9347180)
chr1 (133-188)||(48105116-48105172)
chr1 (133-184)||(47498299-47498349)
chr1 (135-224)||(47955572-47955662)
chr1 (133-184)||(49318170-49318221)
chr1 (134-184)||(1176716-1176766)
chr1 (138-230)||(22149659-22149750)
chr1 (135-224)||(31848158-31848246)
chr1 (135-188)||(32163043-32163097)
chr1 (135-188)||(39692000-39692054)
chr1 (135-188)||(44911025-44911079)
chr1 (135-188)||(46824278-46824332)
chr1 (135-184)||(999529-999578)
chr1 (138-190)||(8108724-8108777)
chr1 (203-232)||(8108978-8109007)
chr1 (135-188)||(20371040-20371092)
chr1 (138-237)||(31847898-31847997)
chr1 (138-191)||(46057190-46057243)
chr1 (133-188)||(13918444-13918500)
chr1 (135-183)||(19007735-19007783)
chr1 (133-188)||(26814692-26814748)
chr1 (136-188)||(47498495-47498547)
chr1 (133-188)||(50430081-50430137)
chr1 (137-188)||(50526472-50526524)
[»] chr7 (37 HSPs)
chr7 (135-232)||(9412281-9412379)
chr7 (132-237)||(3687608-3687713)
chr7 (133-230)||(23686419-23686515)
chr7 (136-191)||(8953886-8953941)
chr7 (138-224)||(27096306-27096392)
chr7 (138-224)||(27181911-27181997)
chr7 (133-230)||(44599487-44599585)
chr7 (135-230)||(44600093-44600189)
chr7 (135-188)||(13772641-13772695)
chr7 (133-187)||(35079958-35080012)
chr7 (135-225)||(13863313-13863404)
chr7 (133-191)||(13772898-13772957)
chr7 (133-186)||(18925060-18925114)
chr7 (137-191)||(33628397-33628451)
chr7 (134-188)||(48359319-48359373)
chr7 (133-191)||(3687351-3687411)
chr7 (135-230)||(8643724-8643820)
chr7 (135-191)||(9412023-9412080)
chr7 (135-188)||(13744233-13744286)
chr7 (135-230)||(13863915-13864010)
chr7 (132-188)||(3204666-3204721)
chr7 (135-187)||(6908213-6908265)
chr7 (133-188)||(37888831-37888887)
chr7 (134-188)||(9035293-9035348)
chr7 (135-186)||(18864404-18864455)
chr7 (138-189)||(42419028-42419079)
chr7 (135-188)||(10533034-10533088)
chr7 (138-188)||(22740591-22740641)
chr7 (135-188)||(37889259-37889313)
chr7 (135-188)||(37972396-37972450)
chr7 (138-187)||(6908485-6908534)
chr7 (133-174)||(27096045-27096086)
chr7 (133-174)||(27182217-27182258)
chr7 (135-175)||(34235738-34235779)
chr7 (139-191)||(38191387-38191440)
chr7 (130-185)||(5735247-5735303)
chr7 (135-174)||(23686731-23686771)
[»] chr6 (24 HSPs)
chr6 (135-237)||(21031979-21032081)
chr6 (135-237)||(3403940-3404043)
chr6 (133-237)||(18242107-18242212)
chr6 (133-230)||(33828988-33829086)
chr6 (135-188)||(10039676-10039729)
chr6 (133-224)||(11656746-11656838)
chr6 (135-230)||(33829594-33829690)
chr6 (133-188)||(22684358-22684413)
chr6 (133-188)||(22754655-22754710)
chr6 (135-189)||(33655114-33655168)
chr6 (138-191)||(3825530-3825583)
chr6 (127-184)||(30388054-30388111)
chr6 (133-188)||(3403715-3403771)
chr6 (135-191)||(13579648-13579704)
chr6 (135-191)||(23250592-23250648)
chr6 (135-224)||(18241854-18241944)
chr6 (148-237)||(30388315-30388402)
chr6 (131-191)||(33971990-33972050)
chr6 (125-191)||(12714421-12714488)
chr6 (138-184)||(31598732-31598778)
chr6 (135-188)||(29074372-29074425)
chr6 (135-188)||(29079136-29079189)
chr6 (135-188)||(29106945-29106998)
chr6 (135-187)||(31598274-31598326)
[»] chr4 (40 HSPs)
chr4 (135-237)||(3930431-3930533)
chr4 (133-237)||(16555768-16555873)
chr4 (135-188)||(11241661-11241714)
chr4 (130-191)||(22681570-22681631)
chr4 (135-230)||(50678779-50678875)
chr4 (135-225)||(43051215-43051306)
chr4 (132-230)||(50679382-50679481)
chr4 (133-230)||(36096433-36096531)
chr4 (138-237)||(13198606-13198707)
chr4 (135-188)||(56505693-56505747)
chr4 (136-188)||(11529169-11529222)
chr4 (135-224)||(35393741-35393829)
chr4 (135-188)||(48405962-48406015)
chr4 (139-191)||(49178813-49178866)
chr4 (135-224)||(13198870-13198960)
chr4 (135-223)||(18077167-18077256)
chr4 (135-188)||(24775783-24775837)
chr4 (135-188)||(36095817-36095871)
chr4 (132-188)||(4239366-4239423)
chr4 (136-191)||(8181992-8182049)
chr4 (135-191)||(16555515-16555572)
chr4 (135-188)||(26207361-26207414)
chr4 (135-187)||(54508815-54508868)
chr4 (133-224)||(3930177-3930268)
chr4 (136-224)||(8488447-8488534)
chr4 (135-186)||(22681881-22681933)
chr4 (133-188)||(32703650-32703706)
chr4 (135-182)||(56506580-56506628)
chr4 (136-191)||(7603146-7603200)
chr4 (134-185)||(7603422-7603473)
chr4 (135-184)||(292782-292832)
chr4 (135-188)||(9023244-9023298)
chr4 (130-191)||(11241384-11241446)
chr4 (133-191)||(27304716-27304773)
chr4 (135-188)||(28196346-28196400)
chr4 (135-188)||(28196773-28196827)
chr4 (126-188)||(169004-169068)
chr4 (135-188)||(23539841-23539893)
chr4 (136-188)||(25161879-25161932)
chr4 (205-237)||(11241641-11241673)
[»] scaffold0192 (1 HSPs)
scaffold0192 (135-230)||(25327-25423)
[»] scaffold0015 (2 HSPs)
scaffold0015 (132-191)||(17153-17212)
scaffold0015 (124-191)||(16842-16908)
[»] scaffold0001 (3 HSPs)
scaffold0001 (133-223)||(438928-439019)
scaffold0001 (138-187)||(183367-183416)
scaffold0001 (125-224)||(439165-439263)
[»] scaffold1221 (2 HSPs)
scaffold1221 (133-188)||(1509-1564)
scaffold1221 (138-191)||(1781-1834)
[»] scaffold0002 (1 HSPs)
scaffold0002 (135-237)||(411923-412024)
[»] scaffold0069 (2 HSPs)
scaffold0069 (133-189)||(50506-50562)
scaffold0069 (135-188)||(50075-50127)
[»] scaffold0376 (2 HSPs)
scaffold0376 (134-191)||(7597-7654)
scaffold0376 (135-188)||(7455-7508)
[»] scaffold0328 (2 HSPs)
scaffold0328 (135-230)||(6753-6849)
scaffold0328 (133-230)||(6150-6248)
[»] scaffold0009 (1 HSPs)
scaffold0009 (135-191)||(205687-205743)
[»] scaffold0598 (1 HSPs)
scaffold0598 (136-187)||(6877-6927)
[»] scaffold0460 (1 HSPs)
scaffold0460 (133-188)||(763-818)
[»] scaffold0017 (1 HSPs)
scaffold0017 (133-188)||(185274-185330)
[»] scaffold0535 (1 HSPs)
scaffold0535 (135-173)||(10012-10051)
[»] scaffold0041 (1 HSPs)
scaffold0041 (135-188)||(38695-38749)
[»] scaffold0176 (1 HSPs)
scaffold0176 (135-188)||(19621-19674)
[»] scaffold0035 (1 HSPs)
scaffold0035 (136-191)||(72967-73023)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 13434135 - 13434271
Alignment:
Q  1 gtaattgtaacttcatatta----gtacaaatcataaactaagaatgtgtacatataacatattgaaggcatggtattgaagtaataataatgccttaaa 96  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  13434135 gtaattgtaacttcatattaattggtacaaatcataaactaagaatgtgtacatataacataatgaaggcatgttattgaagtaataataatgccttaaa 13434234  T
Q  97 attgggtgatcagctttctttgtcatcaaaaaataat 133  Q
    || ||||||||||||||||||||||||||||||||||    
T  13434235 atcgggtgatcagctttctttgtcatcaaaaaataat 13434271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 10293596 - 10293711
Alignment:
Q  123 caaaaaataattggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatct 221  Q
    ||||||| || ||||||||||||| ||||  ||||||||||||| ||||||||  |||||||||||||||         |||||||||||||||||||||    
T  10293596 caaaaaaaaaatggcttaattgcatttttttcccctatcttttgtcaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatct 10293695  T
Q  222 ttttgccccctctctg 237  Q
    ||||||||||| ||||    
T  10293696 ttttgccccctttctg 10293711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 20969075 - 20968971
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccc 231  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |||||||| |||||          |||||||||||||||||||||||||||||||    
T  20969075 ttggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgca-cccctttttttttttgagcgattttgcaccccatctttttgccccc 20968977  T
Q  232 tctctg 237  Q
    | ||||    
T  20968976 tttctg 20968971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 47871175 - 47871121
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccc 189  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  47871175 ggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcaccccc 47871121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 18875245 - 18875155
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    ||||||||||||||||| ||||||||||||||| ||||||   |||||||||||||||         ||||||||||||||||||||||||    
T  18875245 ggcttaattgcacttttgccccctatcttttgctaattgtacgattttgcaccccctctttttttttgagcgattttgcaccccatctttt 18875155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 9027087 - 9027033
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||| ||||||    
T  9027087 tggcttaatttcacttttccccctatcttttgctaattgtgcaattttacacccc 9027033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 42627600 - 42627550
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgca 184  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  42627600 tggcttaattgcacttttccctctatcttttgctaattgtgtgattttgca 42627550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 42672977 - 42673031
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||||||||  |||||||||||||  ||||||||||||    
T  42672977 tggcttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 42673031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 10293965 - 10293873
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  10293965 ttggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctcttttgttttgagcgattttgcaccctatctttt 10293873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 26540694 - 26540747
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||| ||||||| ||||| |||||||| ||||||||||||||||    
T  26540694 ttaattgcacttttgcccctattttttgtcaattgtgcaattttgcaccccctc 26540747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 3353126 - 3353181
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  3353126 ttggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 3353181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 24485515 - 24485460
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| ||||||  |||||||||||||  ||||||||||||    
T  24485515 ttggcttaattgcacttttctccctatagtttgccaattgtgcgattttgcacccc 24485460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 42673351 - 42673296
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  42673351 ttggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 42673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 47666390 - 47666335
Alignment:
Q  134 tggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||||| |||  ||||||||||||| |||||||||||||    
T  47666390 tggcttaattgcacttttcccccctatagtttgccaattgtgcaattttgcacccc 47666335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 8314008 - 8314066
Alignment:
Q  130 taattggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccc 187  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||  |||||||||||    
T  8314008 taattggcttaattgcacttttctcccctatattttgtcaattgtgcgattttgcaccc 8314066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 48159885 - 48159951
Alignment:
Q  123 caaaaaataattggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||| ||| ||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  48159885 caaaaaaaaataggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 48159951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 17372297 - 17372354
Alignment:
Q  134 tggcttaattgcac-ttttccccctatcttttgccaattgtgtaattttgcaccccct 190  Q
    |||||||||||||| |||||||||||| |||||| |||||||  ||||||||||||||    
T  17372297 tggcttaattgcaccttttccccctattttttgctaattgtgcgattttgcaccccct 17372354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 40848521 - 40848574
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||  |||||||||||||  ||||| ||||||    
T  40848521 ggcttaattgcacttttccccctatagtttgccaattgtgcgattttacacccc 40848574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 44008456 - 44008403
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacc 186  Q
    ||||||||||||||||||||  |||||  ||||||||||||| |||||||||||    
T  44008456 ttggcttaattgcacttttcatcctatagtttgccaattgtgcaattttgcacc 44008403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 8315135 - 8315083
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||||||||||||||| |||||||| ||||| ||||||||  |||||||||||    
T  8315135 ggcttaattgcactttcccccctatattttgtcaattgtgcgattttgcaccc 8315083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 21895657 - 21895712
Alignment:
Q  135 ggcttaattgcacttttccccc--tatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| ||||  ||| ||||||||||||||| ||||||||||||    
T  21895657 ggcttaattgcactttttccccactatgttttgccaattgtgtgattttgcacccc 21895712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 1927770 - 1927825
Alignment:
Q  133 ttggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccc 187  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||  |||||||||||    
T  1927770 ttggcttaattgcacctttcccccctatcttttgccaattatgcgattttgcaccc 1927825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 9026726 - 9026789
Alignment:
Q  125 aaaaataattggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||| ||| || ||||||||| |||||| |||||||||||  ||||||| |||||||||||||    
T  9026726 aaaaaaaataggtttaattgcatttttcctcctatcttttgttaattgtgcaattttgcacccc 9026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 18874957 - 18874992
Alignment:
Q  202 agcgattttgcaccccatctttttgccccctctctg 237  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18874957 agcgattttgcaccccatctttttgccccctttctg 18874992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 20968718 - 20968808
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    ||||||||||||| ||||||| ||||||||||  |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  20968718 ggcttaattgcacctttcccccctatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatctttt 20968808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 1101141 - 1101087
Alignment:
Q  138 ttaattgcacttttccccctatc-ttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||| |||||||| ||||| ||||||||  |||||||||||||||    
T  1101141 ttaattgcacttttgcccctatctttttgtcaattgtgcgattttgcaccccctc 1101087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 1928484 - 1928434
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||| ||| | |||||||||||||||||||||  ||||||||||||    
T  1928484 ttaattgcattttcctccctatcttttgccaattgtgcgattttgcacccc 1928434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 3644538 - 3644588
Alignment:
Q  138 ttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||||||||||||| | | ||||||||||| ||||||||||||||||||||    
T  3644538 ttaattgcactttttctctctatcttttgctaattgtgtaattttgcaccc 3644588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 14016014 - 14015964
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||  |||||||||||| |||||||  ||||||||||||    
T  14016014 ttaattgcacttttcatcctatcttttgctaattgtgcgattttgcacccc 14015964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 21896565 - 21896511
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||| |||| ||||||| ||||| ||||||||  ||||||||||||    
T  21896565 tggcttaattgcattttttcccctatattttgtcaattgtgcgattttgcacccc 21896511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 22429153 - 22429211
Alignment:
Q  130 taattggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccc 187  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||  | |||||||||    
T  22429153 taatttgcttaattgcacttttctcccctatattttgccaattgtgcgactttgcaccc 22429211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 40849015 - 40848961
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||| ||||  |||||||||||||  ||||||||||||    
T  40849015 ggcttaattgcacttttcccctctatagtttgccaattgtgcgattttgcacccc 40848961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 47870823 - 47870877
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtg-taattttgcacccc 188  Q
    ||||||||||||||||| |||||||||||||| |||| ||  |||||||||||||    
T  47870823 ggcttaattgcactttttcccctatcttttgctaattatgcgaattttgcacccc 47870877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 13657444 - 13657536
Alignment:
Q  134 tggcttaattgcacttttccccctatctttt-gccaattgtgtaattttgca-ccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||| |||||||| |||||| |||| ||||||||||  |||||||| |||||||         ||||||||||||||||||||||||    
T  13657444 tggcttaattacacttttctccctatttttttgccaattgtgcgattttgcacccccctctttttttttgagcgattttgcaccccatctttt 13657536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 18874882 - 18874935
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||| |||||||||||| ||||||||||||||| |||||||  |||||||||||    
T  18874882 ggctcaattgcactttttccccctatcttttgctaattgtgcgattttgcaccc 18874935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 45060925 - 45060872
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||||||||||||||||| |||||||||||||| |||||||  ||||| |||||    
T  45060925 ggcttaattgcacttttcacccctatcttttgctaattgtgcgattttacaccc 45060872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 53766633 - 53766580
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||||||||||||||||| |||||||  ||||| ||||||| ||||||||||||    
T  53766633 ggcttaattgcacttttcccccctatagtttgcaaattgtgcaattttgcaccc 53766580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 3353597 - 3353553
Alignment:
Q  142 ttgcacttttccccctatcttttgccaattgtgtaattttgcacc 186  Q
    ||||||||||||||||||  |||||||||||||  ||||||||||    
T  3353597 ttgcacttttccccctatagtttgccaattgtgcgattttgcacc 3353553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 27238956 - 27238900
Alignment:
Q  133 ttggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||| |||||||||||||||||| ||||  |||||||||||||  ||||||||||||    
T  27238956 ttggtttaattgcacttttcccctctatagtttgccaattgtgcgattttgcacccc 27238900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 48160389 - 48160333
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| ||||| |||  |||||||||||||  ||||||||||||    
T  48160389 ttggcttaattgcactttccccccctatagtttgccaattgtgcgattttgcacccc 48160333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 53688358 - 53688306
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcac 185  Q
    ||||||||||||||||||  |||||||  |||||||||||||  |||||||||    
T  53688358 ttggcttaattgcactttctcccctatagtttgccaattgtgcgattttgcac 53688306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 45860 - 45758
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctct 234  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||         |||||||||||||||||||||||||||||||| |    
T  45860 ggcttaattgcacttttccccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgcccccttt 45761  T
Q  235 ctg 237  Q
    |||    
T  45760 ctg 45758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 45537 - 45626
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||||||||||||||  |||||||  ||||||||| |||||         |||||||||||||||| |||||||    
T  45537 ggcttaattgcacttttccccctatcttttgttaattgtgcgattttgcactccctctttttttttgagcgattttgcaccctatctttt 45626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 6751 - 6648
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctc 233  Q
    ||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||         ||||||||||||||||||||||||||||||||     
T  6751 tggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccctt 6652  T
Q  234 tctg 237  Q
    ||||    
T  6651 tctg 6648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 6394 - 6451
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||    
T  6394 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcaccccctc 6451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 1485 - 1371
Alignment:
Q  124 aaaaaataattggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctt 222  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||         ||||||||||||||||||||||    
T  1485 aaaaaattcttggcttaattgcactttttccccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctt 1386  T
Q  223 tttgccccctctctg 237  Q
    |||||||||| ||||    
T  1385 tttgccccctttctg 1371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 1107 - 1208
Alignment:
Q  124 aaaaaataattggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctt 222  Q
    |||||||  ||||||||||||||||||| ||||||||||||||  |||||||  |||||||||||||||         |||||||||||||||| |||||    
T  1107 aaaaaattcttggcttaattgcactttttccccctatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatctt 1206  T
Q  223 tt 224  Q
    ||    
T  1207 tt 1208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 48)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 41662459 - 41662354
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccc 231  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||         |||||||||||||||||||||||||||||||    
T  41662459 ttggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccctcttttttattgagcgattttgcaccccatctttttgccccc 41662360  T
Q  232 tctctg 237  Q
    | ||||    
T  41662359 tttctg 41662354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 232
Target Start/End: Original strand, 765731 - 765832
Alignment:
Q  132 attggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||| ||||||||||||||||||| |||||||||||||||||||  |||||||||||||||         ||||||||||||||||||||||||||||||    
T  765731 attgacttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgcccc 765830  T
Q  231 ct 232  Q
    ||    
T  765831 ct 765832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 12281124 - 12281222
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccct 232  Q
    ||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||         ||||||||||||||||||||||||||||||||    
T  12281124 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacctcctctttttttttgagcgattttgcaccccatctttttgccccct 12281222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 43245868 - 43245974
Alignment:
Q  132 attggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||||| ||||||||||||||  |||||||  |||||||||||||||         ||||||||||||||||||||||||||||||    
T  43245868 attggcttaattgcactttttccccctatcttttgataattgtgcgattttgcaccccctcttttttattgagcgattttgcaccccatctttttgcccc 43245967  T
Q  231 ctctctg 237  Q
    || ||||    
T  43245968 ctttctg 43245974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 15156241 - 15156136
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccc 231  Q
    |||||||||||||||||||||||| ||||||||| ||||||||  |||||||||||||||          ||||||||||||||||||||||||||||||    
T  15156241 ttggcttaattgcacttttcccccctatcttttgtcaattgtgcgattttgcaccccctcttttttttttagcgattttgcaccccatctttttgccccc 15156142  T
Q  232 tctctg 237  Q
    | ||||    
T  15156141 tttctg 15156136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 16929304 - 16929239
Alignment:
Q  127 aaataattggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||  |||||||||||||||    
T  16929304 aaataattggcttaattgcacttttctcccctatcttttgctaattgtgcgattttgcaccccctc 16929239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 13936723 - 13936813
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatcttttt 225  Q
    |||||||||||||||||||||||||||||| |||||||||  |||||||||||| |          |||||||||||||||||||||||||    
T  13936723 ggcttaattgcacttttccccctatcttttaccaattgtgcgattttgcaccccatatttttaaacgagcgattttgcaccccatcttttt 13936813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 39724104 - 39724006
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  39724104 ttggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 39724006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 9823415 - 9823319
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  9823415 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 9823319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 43246230 - 43246173
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||    
T  43246230 ggcttaattgcacttttcccccctatcttttgctaattgtgtgattttgcaccccctc 43246173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 74676 - 74739
Alignment:
Q  125 aaaaataattggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||| |||||||||||||||||| | ||||||||| |||||||  ||||||||||||    
T  74676 aaaaataattgacttaattgcacttttccctccatcttttgctaattgtgcgattttgcacccc 74739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 13027337 - 13027239
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||| ||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  13027337 ttggtttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 13027239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 13026635 - 13026731
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||| | |          ||||||||||||||||||||||||| ||||    
T  13026635 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacctcatgtttttaaacgagcgattttgcaccccatctttttccccc 13026731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 3464002 - 3463903
Alignment:
Q  132 attggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||  || |||||||| |||         ||||||||||||||||||||||||| ||||    
T  3464002 attggcttaattgcacttttcccccctatattttgctaattgtgcgatcttgcaccctctcctttgttttgagcgattttgcaccccatctttttacccc 3463903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 22851388 - 22851444
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||    
T  22851388 ttggcttaattgcacttttcacccctatcttttgtcaattgtgcgattttgcacccc 22851444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 24473341 - 24473397
Alignment:
Q  133 ttggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||    
T  24473341 ttggcttaattgcactttttccccctatagtttgccaattgtgtgattttgcacccc 24473397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 43162588 - 43162536
Alignment:
Q  139 taattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||||||||||||| |||| |||  |||||||||||||||    
T  43162588 taattgcacttttccccctatcttttgtcaatcgtgcgattttgcaccccctc 43162536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 12281482 - 12281423
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||    
T  12281482 ttggcttaattgcacttttcccccttatcttttgttaattgtgcgattttgcaccccctc 12281423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 15155883 - 15155973
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    ||||||||||||||||||||| ||||||||||  |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  15155883 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatctttt 15155973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 16928942 - 16929043
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctc 233  Q
    |||||||||||||||| |||| ||||||||||| |||||||  |||||||||||||||         ||||| ||||||||||||||||||||||||||     
T  16928942 ggcttaattgcactttccccccctatcttttgctaattgtgcgattttgcaccccctc-ttttttttgagcg-ttttgcaccccatctttttgccccctt 16929039  T
Q  234 tctg 237  Q
    ||||    
T  16929040 tctg 16929043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 37752075 - 37752138
Alignment:
Q  126 aaaataattggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||| |||||||||||||||||||| |||||||| |||||| |||||||  ||||||||||||    
T  37752075 aaaattattggcttaattgcacttttcccccctatgttttgctaattgtgcgattttgcacccc 37752138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 37752472 - 37752413
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||    
T  37752472 ttggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctc 37752413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 9465607 - 9465653
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaatttt 181  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  9465607 ggcttaattgcacttttcctcctatcttttgtcaattgtgcaatttt 9465653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 15042148 - 15042198
Alignment:
Q  138 ttaattgcacttttccccct-atcttttgccaattgtgtaattttgcaccc 187  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  15042148 ttaattgcactttccccccttatcttttgccaattgtgtgattttgcaccc 15042198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 34313763 - 34313820
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||||| |||||||||||||  |||||||  |||||||||||||||    
T  34313763 ttggcttaattgcactttt-cccctatcttttgttaattgtgcgattttgcaccccctc 34313820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 43162232 - 43162290
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||||||||||||| |||||  |||||||  |||||||||| ||||    
T  43162232 ttggcttaattgcacttttccccctatattttgttaattgtgcgattttgcacctcctc 43162290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 16169172 - 16169225
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacc 186  Q
    ||||||||||||||||||||  |||||  ||||||||||||| |||||||||||    
T  16169172 ttggcttaattgcacttttcatcctatagtttgccaattgtgcaattttgcacc 16169225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 7127660 - 7127708
Alignment:
Q  142 ttgcacttttccccctatcttttgccaattgtgtaattttgcaccccct 190  Q
    ||||||||||||||||||||||||| |||||||  |||||||| |||||    
T  7127660 ttgcacttttccccctatcttttgctaattgtgcgattttgcatcccct 7127708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 9822746 - 9822802
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| ||||||||||||  ||||||||  ||||||||||||    
T  9822746 ttggcttaattgcacttttcacccctatcttttatcaattgtgcgattttgcacccc 9822802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 23123336 - 23123392
Alignment:
Q  133 ttggcttaattgcacttttccc-cctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||| ||||||||||| ||||||||  ||||| ||||||    
T  23123336 ttggcttaattgcacttttccctcctatcttttgtcaattgtgcgattttacacccc 23123392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 37752181 - 37752217
Alignment:
Q  201 gagcgattttgcaccccatctttttgccccctctctg 237  Q
    |||||||||||||||||||||||||||||||| ||||    
T  37752181 gagcgattttgcaccccatctttttgccccctttctg 37752217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 74971 - 74936
Alignment:
Q  202 agcgattttgcaccccatctttttgccccctctctg 237  Q
    ||||||||||||||||||||||||||||||| ||||    
T  74971 agcgattttgcaccccatctttttgccccctttctg 74936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 767759 - 767720
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtg 174  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  767759 ggcttaattgcacttttccccctatcttttgttaattgtg 767720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 9623949 - 9623882
Alignment:
Q  122 tcaaaaaataat-tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||  |||||||||||||||||||  |||||  ||||||||| |||| ||||||||||||    
T  9623949 tcaaaaaataaaatggcttaattgcacttttcatcctatagtttgccaatcgtgtgattttgcacccc 9623882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 23123567 - 23123514
Alignment:
Q  137 cttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||| |||| |||||||||| |||||||  |||||||||||||||    
T  23123567 cttaattgcacttt-ccccttatcttttgctaattgtgcgattttgcaccccctc 23123514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 33747984 - 33748073
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||  || |||||||||| |||||||| |||||||| || |||         |||||||||||||||| |||||||    
T  33747984 ggcttaattgcacttttttccatatcttttgctaattgtgtgattttgcatccgctctttttttttgagcgattttgcaccctatctttt 33748073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 34498114 - 34498176
Alignment:
Q  127 aaataattggcttaattgcac-ttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||| |||||||||| ||||||||||||  |||| ||||||||  ||||||||||||    
T  34498114 aaataattggtttaattgcactttttccccctatagtttgtcaattgtgcgattttgcacccc 34498176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 37670306 - 37670253
Alignment:
Q  137 cttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||| ||||||| ||||  ||||||| ||||||||||||||||    
T  37670306 cttaattgcacttttctccctatc-tttgttaattgtgcaattttgcaccccctc 37670253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 3463642 - 3463694
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||| || ||||||||||||||||||  ||||||| |||||||||||||    
T  3463642 ggcttaattaca-ttttccccctatcttttgttaattgtgcaattttgcacccc 3463694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 6092777 - 6092825
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgca 184  Q
    |||||||||||| |||||||||||||||||| ||||||||  ||||||||    
T  6092777 ggcttaattgca-ttttccccctatcttttgtcaattgtgcgattttgca 6092825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 18020140 - 18020053
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    ||||||||||||||||| ||| |||||||||  |||||||  |||||||||||||||         ||||||||||||||||||||||||    
T  18020140 ggcttaattgcacttttaccc-tatcttttgttaattgtgcgattttgcaccccctc-ttttttttgagcgattttgcaccccatctttt 18020053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 22786843 - 22786892
Alignment:
Q  138 ttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacc 186  Q
    |||||||||||||| ||||||||||||| | |||||||| ||||||||||    
T  22786843 ttaattgcactttttccccctatcttttactaattgtgtgattttgcacc 22786892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 41662107 - 41662164
Alignment:
Q  135 ggcttaattgcac-ttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||| |||||||| |||||||||  |||||||  |||||||||||||||    
T  41662107 ggcttaattgcacattttccccatatcttttgttaattgtgcgattttgcaccccctc 41662164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 3307336 - 3307388
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgca 184  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||  ||||||||    
T  3307336 ttggcttaattgcatttttcacccctatcttttgtcaattgtgcgattttgca 3307388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 15442765 - 15442817
Alignment:
Q  137 cttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||| ||||||||| ||| ||| ||||||||||| ||||||||||||    
T  15442765 cttaattgcatttttcccccctatatttcgccaattgtgtgattttgcacccc 15442817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 25438794 - 25438846
Alignment:
Q  137 cttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| |||  |||||||||||||  ||||||||||||    
T  25438794 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 25438846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 37397201 - 37397145
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| |||||||  |||||||||||||  ||||||| ||||    
T  37397201 ttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcccccc 37397145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 41662521 - 41662573
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacc 186  Q
    |||||||||||||||||||||| |||  |||||||||||||  ||||||||||    
T  41662521 ggcttaattgcacttttcccccatatagtttgccaattgtgcgattttgcacc 41662573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 30190913 - 30191026
Alignment:
Q  125 aaaaataattggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatcttt 223  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||         |||||||||||||||||||||||    
T  30190913 aaaaaaaataggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatcttt 30191012  T
Q  224 ttgccccctctctg 237  Q
    ||||||||| ||||    
T  30191013 ttgccccctttctg 30191026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 40469780 - 40469680
Alignment:
Q  138 ttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctctct 236  Q
    |||||||||||||| ||||||||||||||| |||||||  |||||||||||||||         |||||||||||||||||||||||||||||||| |||    
T  40469780 ttaattgcactttttccccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccctttct 40469681  T
Q  237 g 237  Q
    |    
T  40469680 g 40469680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 20347518 - 20347415
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctc 233  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||         ||| |||||||||||||||||||||| |||||     
T  20347518 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagggattttgcaccccatctttttgtcccctt 20347419  T
Q  234 tctg 237  Q
    ||||    
T  20347418 tctg 20347415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 24832331 - 24832429
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccct 232  Q
    ||||||||||||||||||||| ||||||||||| |||||||  |||||||||||| ||         ||||||||||||||||||||||||||||||||    
T  24832331 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcaccccatctttttttttgagcgattttgcaccccatctttttgccccct 24832429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 11883612 - 11883721
Alignment:
Q  124 aaaaaataattggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctt 222  Q
    |||||||||  ||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||         |||| |||||||||| ||||||    
T  11883612 aaaaaataaaaggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcaattttgcacctcatctt 11883711  T
Q  223 tttgccccct 232  Q
    ||||||||||    
T  11883712 tttgccccct 11883721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 6171510 - 6171408
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctc 233  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||| ||||||         |||| |||||||||||||||||||||||||||     
T  6171510 ggcttaattgcacttttcccccctatcttttgccaattgtgggattttgca-cccctctttttttttgagcaattttgcaccccatctttttgccccctt 6171412  T
Q  234 tctg 237  Q
    ||||    
T  6171411 tctg 6171408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 32673193 - 32673102
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccc 229  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||          |||||||||||||||||||||||| ||||    
T  32673193 ttaattgcactttttcccctatcttttgccaattgtgcgattttgcaccccctatttttttttgagcgattttgcaccccatcttttcgccc 32673102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 2639536 - 2639440
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  2639536 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 2639440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 11883982 - 11883890
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||||||| |||||||||| |||||||  |||||||||||||||         |||||||||||||| |||||||||    
T  11883982 ttggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcactccatctttt 11883890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 26841587 - 26841683
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  26841587 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 26841683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 26842294 - 26842196
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    ||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  26842294 ttggcttaagtgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 26842196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 15321394 - 15321486
Alignment:
Q  137 cttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    ||||||||||||||||||| |||||||||  ||||||| ||||||||| |||||          ||||||||||||||||||||||||||||||    
T  15321394 cttaattgcacttttcccc-tatcttttgttaattgtgcaattttgcatcccctattttattttgagcgattttgcaccccatctttttgcccc 15321486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 18296747 - 18296693
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  18296747 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 18296693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 2638820 - 2638916
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||| ||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  2638820 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcaccccatatttttaaacgagcgattttgcaccccatctttttccccc 2638916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 6171154 - 6171207
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacc 186  Q
    |||||||||||||||||||||||||||||||||  |||||||  ||||||||||    
T  6171154 ttggcttaattgcacttttccccctatcttttgttaattgtgcgattttgcacc 6171207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 18296077 - 18296167
Alignment:
Q  136 gcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatcttttt 225  Q
    ||||||||| ||||||| ||||||||||||||||||||||  |||||||||||| |          |||||||||||||||||||||||||    
T  18296077 gcttaattgtacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatcttttt 18296167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 43495660 - 43495562
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccct 232  Q
    |||||||||||||||||| || ||||| |||||| |||||||  |||||||| ||||||         ||||||||||||||||||||||||||| ||||    
T  43495660 ttggcttaattgcactttcccacctatattttgctaattgtgcgattttgcatcccctc-ttttttttgagcgattttgcaccccatctttttgcgccct 43495562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 7591204 - 7591297
Alignment:
Q  138 ttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    ||||||| ||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  7591204 ttaattgtacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 7591297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 17345736 - 17345828
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccc 231  Q
    |||||||||||||||||| |||||||||| |||| || ||||||||||||||||         ||| |||||||||||| ||||||||| ||||    
T  17345736 ttaattgcacttttcccc-tatcttttgctaattatgcaattttgcaccccctcttttattttgagtgattttgcaccctatctttttggcccc 17345828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 18055050 - 18055103
Alignment:
Q  137 cttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||||||||||||    
T  18055050 cttaattgcacttttcccccta-cttttgctaattgtgcgattttgcaccccctc 18055103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 43495535 - 43495481
Alignment:
Q  138 ttaattgcacttttccccctatc-ttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||||||||| ||||| ||||||||  |||||||||||||||    
T  43495535 ttaattgcacttttccccctatctttttgtcaattgtgcgattttgcaccccctc 43495481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 30191281 - 30191189
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||| ||||||||||||   |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  30191281 ttggcttaattgcacttttcccccctatcttttattaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatctttt 30191189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 40221311 - 40221364
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacc 186  Q
    ||||||||||||||| |||||||||||||||||| ||||||   ||||||||||    
T  40221311 ttggcttaattgcacctttccccctatcttttgctaattgttcgattttgcacc 40221364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 40469425 - 40469517
Alignment:
Q  133 ttggcttaattgcacttttccc-cctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||| | ||||||| |||||||||||| |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  40469425 ttggcttaattgtatttttccctcctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatctttt 40469517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 17850976 - 17851032
Alignment:
Q  133 ttggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  17850976 ttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 17851032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 26737482 - 26737537
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||| || |||||||||| |||||||  |||||||||||||||    
T  26737482 ggcttaattgcacttttctcc-tatcttttgctaattgtgcgattttgcaccccctc 26737537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 26737837 - 26737781
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| |||||||||||||| || ||||  ||||||||||||    
T  26737837 ttggcttaattgcacttttcacccctatcttttgctaactgtgcgattttgcacccc 26737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 29230282 - 29230334
Alignment:
Q  135 ggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcacc 186  Q
    ||||||||||||||||||| | |||||||||| ||||||||| ||||||||||    
T  29230282 ggcttaattgcacttttcctctctatcttttgtcaattgtgtgattttgcacc 29230334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 5378661 - 5378715
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  5378661 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 5378715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 37720204 - 37720258
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  37720204 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 37720258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 41790966 - 41790912
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| ||||||| ||||||||||||||  ||||||| ||||    
T  41790966 ggcttaattgcacttttcccccctatattttgccaattgtgcgattttgcccccc 41790912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 29343584 - 29343633
Alignment:
Q  138 ttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcacc 186  Q
    |||||||||||||||| | |||||||||| ||||||||| ||||||||||    
T  29343584 ttaattgcacttttcctctctatcttttgtcaattgtgtgattttgcacc 29343633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 6495775 - 6495723
Alignment:
Q  135 ggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcacc 186  Q
    ||||||||||||||||||| ||||||||||||  |||||||  ||||||||||    
T  6495775 ggcttaattgcacttttcctccctatcttttgtgaattgtgcgattttgcacc 6495723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 7664729 - 7664673
Alignment:
Q  133 ttggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||| ||||||  |||| ||||||||  ||||||||||||    
T  7664729 ttggcttaattgcacttttcctccctatagtttgtcaattgtgcgattttgcacccc 7664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 16911321 - 16911269
Alignment:
Q  136 gcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||  |||||||  |||||||||||||  ||||||||||||    
T  16911321 gcttaattgcactttcgcccctatagtttgccaattgtgcgattttgcacccc 16911269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 17346088 - 17346032
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||| ||  |||||||||| |||||||  |||||||||| ||||    
T  17346088 ggcttaattgcactttttcctttatcttttgctaattgtgcgattttgcacctcctc 17346032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 18750178 - 18750126
Alignment:
Q  136 gcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||| |||||||||  |||| ||||||||  ||||||||||||    
T  18750178 gcttaattgcacttctccccctatagtttgtcaattgtgcgattttgcacccc 18750126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 26692876 - 26692820
Alignment:
Q  133 ttggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||| |||||||||||||||||| ||||  |||||||||||||  ||||||||||||    
T  26692876 ttggtttaattgcacttttcccctctatagtttgccaattgtgcgattttgcacccc 26692820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 25115757 - 25115860
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctc 233  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||          ||||||||||||||||||||||||||||||||     
T  25115757 ggcttaattgcacttttcccccctatcttttgccaattgtgtgattttgcaccccctttttttttttgagcgattttgcaccccatctttttgccccctt 25115856  T
Q  234 tctg 237  Q
    ||||    
T  25115857 tctg 25115860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 25174849 - 25174952
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctc 233  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||          ||||||||||||||||||||||||||||||||     
T  25174849 ggcttaattgcacttttcccccctatcttttgccaattgtgtgattttgcaccccctttttttttttgagcgattttgcaccccatctttttgccccctt 25174948  T
Q  234 tctg 237  Q
    ||||    
T  25174949 tctg 25174952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 18433013 - 18433118
Alignment:
Q  133 ttggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccc 231  Q
    ||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||| ||         |||||||||||||||||||||||||||||||    
T  18433013 ttggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcaccccatctttttttttgagcgattttgcaccccatctttttgccccc 18433112  T
Q  232 tctctg 237  Q
    | ||||    
T  18433113 tttctg 18433118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 18817668 - 18817569
Alignment:
Q  132 attggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  18817668 attggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 18817569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 26020450 - 26020553
Alignment:
Q  135 ggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctc 233  Q
    ||||||||||||||||||| ||||||||||||| |||||||  |||||||||||| ||         ||||||||||||||| ||||||||||||||||     
T  26020450 ggcttaattgcacttttcctccctatcttttgctaattgtgcgattttgcaccccatctttttttttgagcgattttgcaccgcatctttttgccccctt 26020549  T
Q  234 tctg 237  Q
    ||||    
T  26020550 tctg 26020553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 34577218 - 34577164
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  34577218 tggcttaattgcactttttcccctatcttttgctaattgtgtgattttgcacccc 34577164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 34576864 - 34576968
Alignment:
Q  132 attggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccc 231  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||  ||||| |||||| ||         |||||||||||||||||||||||||||||||    
T  34576864 attggtttaattgcactttcccccctatcttttgctaattgtgcgattttacaccccatc-ttttttttgagcgattttgcaccccatctttttgccccc 34576962  T
Q  232 tctctg 237  Q
    | ||||    
T  34576963 tttctg 34576968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 37610202 - 37610255
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  37610202 ggcttaattgcacttttccccctatagtttgccaattgtgtgattttgcacccc 37610255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 37780320 - 37780373
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  37780320 ggcttaattgcacttttccccctatagtttgccaattgtgtgattttgcacccc 37780373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 22428934 - 22428987
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||| ||||||||||||||| |||||||  ||||||||||||    
T  22428934 ggcttaattgcactttcccccctatcttttgctaattgtgcgattttgcacccc 22428987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 22429249 - 22429196
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||| ||||||||||||||||||| |||||||  ||||||||||||    
T  22429249 ggcttaattgcatttttccccctatcttttgctaattgtgcgattttgcacccc 22429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 33324892 - 33324835
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||||    
T  33324892 ggcttaattgcacttttttcccctatcttttgtcaattgtgtgattttgcaccccctc 33324835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 22729492 - 22729440
Alignment:
Q  136 gcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||||||  |||||||||||||  ||||||||||||    
T  22729492 gcttaattgcacttttccccctataatttgccaattgtgcgattttgcacccc 22729440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 31569910 - 31569958
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcacc 186  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  31569910 ttaattgcacttttccccctatcttttgtcaattgtgcgattttgcacc 31569958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 25175205 - 25175115
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  25175205 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatctttt 25175115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 9665560 - 9665609
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  9665560 ttaattgcacttttcccc-tatcttttgctaattgtgcaattttgcacccc 9665609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 9665881 - 9665828
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    ||||||||||| |||||||||||||||||||||| |||||||  |||||||||||    
T  9665881 ttggcttaattccacttttccccctatcttttgctaattgtg-cattttgcaccc 9665828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 18433370 - 18433281
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||         ||||||||||||||||||||||||    
T  18433370 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctc-ttttttttgagcgattttgcaccccatctttt 18433281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 18816952 - 18817006
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||| ||||| ||||||||||||||||||||||  ||||||||||||    
T  18816952 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcacccc 18817006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 23011077 - 23011131
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||||||||||||| |||||||| |||||||||| |||||||  |||||||||||    
T  23011077 ttggcttaattgcatttttccccttatcttttgctaattgtgcgattttgcaccc 23011131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 11350808 - 11350903
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||| ||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  11350808 ggcttaattgcatttttcacccctatcttttgccaattgtg-cattttgcaccccatatttttaaacgagcgattttgcaccccatctttttccccc 11350903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 41383220 - 41383167
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||| |||||||||||||| |||||| |||||||  ||||||||||||    
T  41383220 ggcttaattgaacttttccccctattttttgctaattgtgcgattttgcacccc 41383167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 5187884 - 5187828
Alignment:
Q  135 ggcttaattgcacttttccccct-atcttttgccaattgtgtaattttgcaccccct 190  Q
    ||||||||||||||||| ||||| ||||||||  ||||||| |||||||||||||||    
T  5187884 ggcttaattgcacttttgccccttatcttttgttaattgtgcaattttgcaccccct 5187828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 11351478 - 11351427
Alignment:
Q  138 ttaattgcacttttccc-cctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||| | ||||||||||||||||||||  ||||||||||||    
T  11351478 ttaattgcacttttcactcctatcttttgccaattgtgcgattttgcacccc 11351427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 16726084 - 16726135
Alignment:
Q  141 attgcactttt-ccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||| ||||    
T  16726084 attgcacttttgccccctatcttttgccaattgtgcgattttgcacctcctc 16726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 25116115 - 25116060
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccc 189  Q
    |||||||||||||||||||||| |||||||||  |||||||  |||||||||||||    
T  25116115 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccc 25116060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 43464245 - 43464194
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacc 186  Q
    |||||||||||||||||||||||||  |||| ||||||||  ||||||||||    
T  43464245 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacc 43464194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 12498567 - 12498621
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  12498567 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 12498621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 12498982 - 12498928
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  12498982 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 12498928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 22429210 - 22429176
Alignment:
Q  203 gcgattttgcaccccatctttttgccccctctctg 237  Q
    |||||||||||||||||||||||||||||| ||||    
T  22429210 gcgattttgcaccccatctttttgccccctttctg 22429176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 22629581 - 22629524
Alignment:
Q  133 ttggcttaattgcacttttcccc--ctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||| |||||||||||||| |||  |||||||||| ||||| ||||||||||||||||    
T  22629581 ttggtttaattgcactttttccctcctatcttttgtcaattatgtaattttgcacccc 22629524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 26571218 - 26571164
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  26571218 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 26571164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 43463759 - 43463809
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||  |||||||||||||  ||||||||||||    
T  43463759 ttaattgcacttttccccttatagtttgccaattgtgcgattttgcacccc 43463809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 12441040 - 12441093
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacc 186  Q
    |||||||||||||||||||  |||||||||||   ||||||| |||||||||||    
T  12441040 ttggcttaattgcacttttttccctatcttttattaattgtgcaattttgcacc 12441093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 12441366 - 12441326
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtg 174  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  12441366 ttggcttaattgcactttt-cccctatcttttgctaattgtg 12441326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 22729006 - 22729058
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcac 185  Q
    |||||||||||||||||||||||||||  ||||  |||||||  |||||||||    
T  22729006 ttggcttaattgcacttttccccctatagtttgtaaattgtgcgattttgcac 22729058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 47955306 - 47955409
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctc 233  Q
    ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||         ||||||||||||||||||||||||||||||||     
T  47955306 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccctt 47955405  T
Q  234 tctg 237  Q
    ||||    
T  47955406 tctg 47955409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 17518653 - 17518599
Alignment:
Q  137 cttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  17518653 cttaattgcacttttccccctatcttttgccaattgtgcgattttgcaccccctc 17518599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 13589712 - 13589656
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||    
T  13589712 ggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcaccccctc 13589656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 6002235 - 6002333
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  6002235 ttggcttaattgcacttttcacccctatcttttgtcaattgtgtgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 6002333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 41082908 - 41083011
Alignment:
Q  134 tggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccct 232  Q
    ||||||||||| |||||| |||||||||||||||||||||||  |||||||| ||||||          |||||||||||||||||||||||||||||||    
T  41082908 tggcttaattgtactttttccccctatcttttgccaattgtgcgattttgcatcccctcttttttttt-agcgattttgcaccccatctttttgccccct 41083006  T
Q  233 ctctg 237  Q
     ||||    
T  41083007 ttctg 41083011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 49284409 - 49284505
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  49284409 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 49284505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 20371408 - 20371352
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccc 189  Q
    |||||||||||||||||||||||||||  |||||||||||||  |||||||||||||    
T  20371408 ttggcttaattgcacttttccccctatagtttgccaattgtgcgattttgcaccccc 20371352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 48190769 - 48190825
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  48190769 ttggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 48190825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 27172114 - 27172169
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||||  |||||||||||||  ||||||||||||    
T  27172114 ttggcttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 27172169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 1176839 - 1176893
Alignment:
Q  138 ttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  1176839 ttaattgcacttttaccccctatcttttgtcaattgtgcaattttgcaccccctc 1176893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 8109047 - 8108993
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  8109047 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 8108993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 20480667 - 20480613
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||||||||||||||||||||||||||  |||||||||||||  |||||||||||    
T  20480667 ttggcttaattgcacttttccccctatagtttgccaattgtgcgattttgcaccc 20480613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 49317751 - 49317801
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgca 184  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  49317751 tggcttaattgcacttttccccctatagtttgccaattgtgcaattttgca 49317801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 6703951 - 6703894
Alignment:
Q  132 attggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||| |||||||  ||||||||||||| |||||||||||||    
T  6703951 attggcttaattgcacttttctcccctatagtttgccaattgtgcaattttgcacccc 6703894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 9347604 - 9347551
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||| ||||||||  ||||||||||||| |||||||||||||    
T  9347604 ggcttaattgcactttcccccctatagtttgccaattgtgcaattttgcacccc 9347551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 48191420 - 48191355
Alignment:
Q  124 aaaaaataattggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||||| |||  ||||||||||||    
T  48191420 aaaaaaaaataggcttaattgcacttttcacccctatcttttgccaatggtgcgattttgcacccc 48191355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 21687023 - 21687079
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||| |||  |||| ||||||||||||||||||||||    
T  21687023 ttggcttaattgcacttttcccccctatagtttgtcaattgtgtaattttgcacccc 21687079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 41083264 - 41083208
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||||||||||||  | |||||  |||||||||||||||    
T  41083264 ggcttaattgcacttttccccctatcttttgttagttgtgcgattttgcaccccctc 41083208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 50615676 - 50615621
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  50615676 ttggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 50615621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 50623504 - 50623449
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  50623504 ttggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 50623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 4692487 - 4692433
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| ||||||||  ||||||||||||| |||||||||||||    
T  4692487 ggcttaattgcactttttccccctatagtttgccaattgtgcaattttgcacccc 4692433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 17518303 - 17518392
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    ||||||||||||| ||||||| |||||||||  |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  17518303 ggcttaattgcacctttccccttatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatctttt 17518392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 1177069 - 1177016
Alignment:
Q  138 ttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcaccccct 190  Q
    |||||||||||||||| |||||||||| || ||||||| |||||||||||||||    
T  1177069 ttaattgcacttttcctccctatctttcgctaattgtgcaattttgcaccccct 1177016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 20480168 - 20480221
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  20480168 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 20480221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 22149403 - 22149490
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||||||||| ||||  |||||||  |||||||||||||||         ||||||||||||||||||||||||    
T  22149403 ggcttaattgcacttttccccctatc-tttggtaattgtgcgattttgcaccccctc-ttttttttgagcgattttgcaccccatctttt 22149490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 9347124 - 9347180
Alignment:
Q  133 ttggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  9347124 ttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 9347180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 48105172 - 48105116
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||| |||  |||||||||||||  ||||||||||||    
T  48105172 ttggcttaattgcacttttcccccttatagtttgccaattgtgcgattttgcacccc 48105116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 47498299 - 47498349
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgca 184  Q
    |||||||||||||||||| ||||||||  ||||||||||||| |||||||||    
T  47498299 ttggcttaattgcacttt-ccccctatagtttgccaattgtgcaattttgca 47498349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 47955662 - 47955572
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||| ||||||||||||   |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  47955662 ggcttaattgcacttttcccccctatcttttattaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatctttt 47955572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 49318221 - 49318170
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgca 184  Q
    |||||||||||||||||| ||||||||  |||||||||||||  ||||||||    
T  49318221 ttggcttaattgcactttcccccctatagtttgccaattgtgcgattttgca 49318170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 1176716 - 1176766
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgca 184  Q
    ||||||||||||||||| |||||||| |||||| |||||||  ||||||||    
T  1176716 tggcttaattgcactttcccccctatattttgctaattgtgcgattttgca 1176766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 22149750 - 22149659
Alignment:
Q  138 ttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    ||||||||||||||||||| |||||||||| |||||||  |||||||||| |||           |||||||||||||||||||||||||||||    
T  22149750 ttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacctcct--tttttttttagcgattttgcaccccatctttttgcccc 22149659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 31848246 - 31848158
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||| |||||||||||||  ||||||   |||||||||||||||         ||||||||||||||||||||||||    
T  31848246 ggcttaattgcacttttctcccctatcttttgttaattgtacgattttgcaccccctc--ttttttcgagcgattttgcaccccatctttt 31848158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 32163097 - 32163043
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  32163097 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 32163043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 39692054 - 39692000
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| ||||||| ||||| ||||||||  ||||||||||||    
T  39692054 ggcttaattgcacttttcccccctatattttgtcaattgtgcgattttgcacccc 39692000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 44911025 - 44911079
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||| ||||| ||| ||||||||||||||  ||||||||||||    
T  44911025 ggcttaattgcactttccccccctatattttgccaattgtgcgattttgcacccc 44911079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 46824332 - 46824278
Alignment:
Q  135 ggcttaattgcacttttccc-cctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| || |||||  ||||||||||||| |||||||||||||    
T  46824332 ggcttaattgcactttttcctcctatagtttgccaattgtgcaattttgcacccc 46824278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 999578 - 999529
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgca 184  Q
    |||||||||||||||||||||||||   ||||||||||||  ||||||||    
T  999578 ggcttaattgcacttttccccctatagattgccaattgtgcgattttgca 999529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 8108724 - 8108777
Alignment:
Q  138 ttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcaccccct 190  Q
    |||||||||||||||| ||||||||||||  |||||||  ||||||||||||||    
T  8108724 ttaattgcacttttcctccctatcttttgttaattgtgcgattttgcaccccct 8108777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Complemental strand, 8109007 - 8108978
Alignment:
Q  203 gcgattttgcaccccatctttttgccccct 232  Q
    ||||||||||||||||||||||||||||||    
T  8109007 gcgattttgcaccccatctttttgccccct 8108978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 20371040 - 20371092
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||| ||||||||  |||| |||||||| |||||||||||||    
T  20371040 ggcttaattgcacttt-ccccctatagtttgtcaattgtgcaattttgcacccc 20371092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 31847898 - 31847997
Alignment:
Q  138 ttaattgcacttttccccct-atcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctctct 236  Q
    ||||||||||||| |||||| ||||||||| ||||||| ||||||||| ||| |          |||||||||||||||| ||||||||||||||| |||    
T  31847898 ttaattgcactttacccccttatcttttgctaattgtgcaattttgcatcccat-attttttttgagcgattttgcacccgatctttttgccccctttct 31847996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 46057243 - 46057190
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||| |||||||||||||| |||| || ||||||| || |||||    
T  46057243 ttaattgcactttttcccctatcttttgctaattatgcaattttgaactccctc 46057190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 13918444 - 13918500
Alignment:
Q  133 ttggcttaattgcacttttccc-cctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| || |||||  |||||||||||||  ||||||||||||    
T  13918444 ttggcttaattgcactttttcctcctatagtttgccaattgtgcgattttgcacccc 13918500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 19007735 - 19007783
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgc 183  Q
    |||||||||||||||| ||||||||  |||||||||||||  |||||||    
T  19007735 ggcttaattgcactttcccccctatagtttgccaattgtgcgattttgc 19007783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 26814692 - 26814748
Alignment:
Q  133 ttggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||| ||||||  |||| ||||||||  ||||||||||||    
T  26814692 ttggcttaattgcacttttcctccctatagtttgtcaattgtgcgattttgcacccc 26814748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 47498547 - 47498495
Alignment:
Q  136 gcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||||||  |||| ||||||||   |||||||||||    
T  47498547 gcttaattgcacttttccccctatagtttgtcaattgtgcggttttgcacccc 47498495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 50430137 - 50430081
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcacccc 188  Q
    |||| ||||||||||||||||||| |||  |||||||||||||  ||||||||||||    
T  50430137 ttggtttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 50430081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 50526524 - 50526472
Alignment:
Q  137 cttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  50526524 cttaattgcactttttccccctatagtttgccaattgtgcgattttgcacccc 50526472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 9412379 - 9412281
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccct 232  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||         ||||||||||||||||||||||||||||||||    
T  9412379 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccct 9412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 3687713 - 3687608
Alignment:
Q  132 attggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||         ||||||||||||||||||||||||||||||    
T  3687713 attggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccctc-ttttttttgagcgattttgcaccccatctttttgcccc 3687615  T
Q  231 ctctctg 237  Q
    || ||||    
T  3687614 ctttctg 3687608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 23686419 - 23686515
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||||||||||| |||         ||||||||||||| ||||||||||||||||    
T  23686419 ttggcttaattgcacttttccccctatcttttgctaattgtacaattttgcaccctctctatttttttgagcgattttgca-cccatctttttgcccc 23686515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 8953941 - 8953886
Alignment:
Q  136 gcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  8953941 gcttaattgcacttttccccctatcttttgttaattgtgcaattttgcaccccctc 8953886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 27096392 - 27096306
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||         ||||||||||||||||||| ||||    
T  27096392 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcccctcttcttttttgagcgattttgcaccccatatttt 27096306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 27181911 - 27181997
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||         ||||||||||||||||||| ||||    
T  27181911 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcccctcttcttttttgagcgattttgcaccccatatttt 27181997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 44599487 - 44599585
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  44599487 ttggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 44599585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 44600189 - 44600093
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  44600189 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 44600093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 13772641 - 13772695
Alignment:
Q  135 ggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  13772641 ggcttaattgcacttttcctccctatcttttgctaattgtgtgattttgcacccc 13772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 35079958 - 35080012
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||||||||||||||||||||||||||||||||| |||||||   ||||||||||    
T  35079958 ttggcttaattgcacttttccccctatcttttgctaattgtggggttttgcaccc 35080012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 13863313 - 13863404
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatcttttt 225  Q
    |||||||||||| ||||| ||||||||||||||||||||||  |||||||||||| |          |||||||||||||||||||||||||    
T  13863313 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatcttttt 13863404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 13772957 - 13772898
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||||| |||| ||||| |||||||  |||||||||||||||    
T  13772957 ttggcttaattgcacttttcccccctatcatttgctaattgtgcgattttgcaccccctc 13772898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 18925060 - 18925114
Alignment:
Q  133 ttggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcacc 186  Q
    ||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||    
T  18925060 ttggcttaattgcacttttcttccctatcttttgctaattgtgcaattttgcacc 18925114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 33628397 - 33628451
Alignment:
Q  137 cttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||| || |||||||||| ||||||| ||||||||| ||||||    
T  33628397 cttaattgcacttttctccttatcttttgctaattgtgcaattttgcatcccctc 33628451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 48359319 - 48359373
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  48359319 tggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 48359373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 3687351 - 3687411
Alignment:
Q  133 ttggcttaattgcactttt--ccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||  ||||||||||||||  |||||||  |||||||||||||||    
T  3687351 ttggcttaattgcacttttccccccctatcttttgttaattgtgcgattttgcaccccctc 3687411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 8643820 - 8643724
Alignment:
Q  135 ggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    ||||||||||||||||||  ||||||||||| |||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  8643820 ggcttaattgcacttttcatccctatcttttaccaattgtgcgattttgcaccccatgttattaaacgagcgattttgcaccccatctttttccccc 8643724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 9412023 - 9412080
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||    
T  9412023 ggcttaattgcacttttcccccttatcttttgttaattgtgcgattttgcaccccctc 9412080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 13744286 - 13744233
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  13744286 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 13744233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 13864010 - 13863915
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||| ||||||||||||||||||||||  | |||||||||| |          ||||||||||||||||||||||||| ||||    
T  13864010 ggcttaattgcacttttcacccctatcttttgccaattgtgcga-tttgcaccccatatttttaaacgagcgattttgcaccccatctttttccccc 13863915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 3204666 - 3204721
Alignment:
Q  132 attggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  3204666 attggcttaattgcacttt-ccccctatagtttgccaattgtgcgattttgcacccc 3204721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 6908213 - 6908265
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    ||||||||||||||||||||||||||| |||  |||||||  |||||||||||    
T  6908213 ggcttaattgcacttttccccctatctattgttaattgtgcgattttgcaccc 6908265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 37888831 - 37888887
Alignment:
Q  133 ttggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  37888831 ttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 37888887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 9035348 - 9035293
Alignment:
Q  134 tggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  9035348 tggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 9035293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 18864455 - 18864404
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacc 186  Q
    |||||||||| ||||||||||||||  |||||||||||||  ||||||||||    
T  18864455 ggcttaattgtacttttccccctatagtttgccaattgtgcgattttgcacc 18864404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 42419079 - 42419028
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccc 189  Q
    ||||||||||||||||||||||  |||||||||||||   ||||||||||||    
T  42419079 ttaattgcacttttccccctatagtttgccaattgtgcgtttttgcaccccc 42419028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 10533034 - 10533088
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  10533034 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 10533088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 22740641 - 22740591
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  22740641 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 22740591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 37889313 - 37889259
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  37889313 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 37889259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 37972450 - 37972396
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  37972450 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 37972396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 6908534 - 6908485
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    ||||||||||||| |||||||| |||||| |||||||  |||||||||||    
T  6908534 ttaattgcactttcccccctattttttgctaattgtgcgattttgcaccc 6908485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 27096045 - 27096086
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtg 174  Q
    |||||||||||||||||| |||||||| |||||| |||||||    
T  27096045 ttggcttaattgcactttcccccctatattttgctaattgtg 27096086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 27182258 - 27182217
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtg 174  Q
    |||||||||||||||||| |||||||| |||||| |||||||    
T  27182258 ttggcttaattgcactttcccccctatattttgctaattgtg 27182217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 34235738 - 34235779
Alignment:
Q  135 ggcttaattgcacttttccc-cctatcttttgccaattgtgt 175  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  34235738 ggcttaattgcacttttccctcccatcttttgccaattgtgt 34235779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 38191387 - 38191440
Alignment:
Q  139 taattgcacttttccccctatc-ttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||| |||||||| ||||||||||||||  |||||||||| ||||    
T  38191387 taattgcactttttcccctatctttttgccaattgtgcgattttgcacctcctc 38191440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 5735247 - 5735303
Alignment:
Q  130 taattggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcac 185  Q
    ||||| ||||||||||||||||| ||||||||||| || |||||||  |||||||||    
T  5735247 taattagcttaattgcacttttctcccctatctttggctaattgtgcgattttgcac 5735303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 23686771 - 23686731
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtg 174  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  23686771 ggcttaattgcactttttccccctatcttttgctaattgtg 23686731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 21031979 - 21032081
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctct 234  Q
    |||||||||||||||||||||||| ||||||| |||||||  |||||||||||||||         |||||||||||||||||||||||||||||||| |    
T  21031979 ggcttaattgcacttttccccctaacttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgcccccttt 21032078  T
Q  235 ctg 237  Q
    |||    
T  21032079 ctg 21032081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 3404043 - 3403940
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctc 233  Q
    |||||||||||||||||||||| |||||||||| |||||||  |||||||||||||||         ||||||||||||||||||||||||||||||||     
T  3404043 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccctt 3403944  T
Q  234 tctg 237  Q
    ||||    
T  3403943 tctg 3403940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 18242212 - 18242107
Alignment:
Q  133 ttggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccc 231  Q
    |||||||||||||| ||||   |||||||||||||||||||||  |||||||||||||||         |||||||||||||||||||||||||||||||    
T  18242212 ttggcttaattgcattttttttccctatcttttgccaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgccccc 18242113  T
Q  232 tctctg 237  Q
    | ||||    
T  18242112 tttctg 18242107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 33828988 - 33829086
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  33828988 ttggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 33829086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 10039676 - 10039729
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  10039676 ggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccc 10039729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 11656838 - 11656746
Alignment:
Q  133 ttggcttaattgcacttttccc-cctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||| | |||||||||||| |||||||  |||||||||||||||         ||||||||||||||||||||||||    
T  11656838 ttggcttaattgcacttttctctcctatcttttgctaattgtgcgattttgcaccccctctttatttttgagcgattttgcaccccatctttt 11656746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 33829690 - 33829594
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  33829690 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 33829594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 22684413 - 22684358
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||||| |||  |||||||||||||| ||||||||||||    
T  22684413 ttggcttaattgcacttttccccttatagtttgccaattgtgtgattttgcacccc 22684358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 22754655 - 22754710
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||||| |||  |||||||||||||| ||||||||||||    
T  22754655 ttggcttaattgcacttttccccttatagtttgccaattgtgtgattttgcacccc 22754710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 33655168 - 33655114
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccc 189  Q
    ||||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||    
T  33655168 ggcttaattgcacttgtccccttatcttttgctaattgtgcaattttgcaccccc 33655114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 3825530 - 3825583
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||| |||||| |||||||  |||||||||||||||    
T  3825530 ttaattgcacttttccccctatattttgctaattgtgcgattttgcaccccctc 3825583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 30388054 - 30388111
Alignment:
Q  127 aaataattggcttaattgcacttttccccctatcttttgccaattgtgtaattttgca 184  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||  ||||||||    
T  30388054 aaatatttggcttaattgcactttcccccctatcttttgctaattgtgcgattttgca 30388111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 3403715 - 3403771
Alignment:
Q  133 ttggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||||| ||||||||||| |||||||  ||||||||||||    
T  3403715 ttggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 3403771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 13579704 - 13579648
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||| ||||||| ||||| |||||||  |||||||||||||||    
T  13579704 ggcttaattgcacttttctccctatcgtttgctaattgtgcgattttgcaccccctc 13579648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 23250592 - 23250648
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||| ||||||||||||| ||||||||  || ||||||||||||    
T  23250592 ggcttaattgcactttttcccctatcttttgtcaattgtgagatcttgcaccccctc 23250648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 18241854 - 18241944
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    ||||||||||||||||||||| ||||||||||  |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  18241854 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctcttttgttttgagcgattttgcaccctatctttt 18241944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 30388402 - 30388315
Alignment:
Q  148 ttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctctctg 237  Q
    ||||||||||||||||||| |||||||  ||||||||||||||          ||||||||||||||||||||||||| |||||| ||||    
T  30388402 ttttccccctatcttttgctaattgtgcgattttgcaccccct--ttttttttgagcgattttgcaccccatctttttaccccctttctg 30388315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 33971990 - 33972050
Alignment:
Q  131 aattggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||| |||| |||||||||||||  ||||||   |||||||||||||||    
T  33971990 aattggcttaattgcagtttttcccctatcttttgttaattgtacgattttgcaccccctc 33972050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 12714421 - 12714488
Alignment:
Q  125 aaaaataattggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||| | |||||||||||| ||||||||||||||  |||||||  |||||||| ||||||    
T  12714421 aaaaataattggttgaattgcacttttgccccctatcttttgttaattgtgcgattttgcagcccctc 12714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 31598778 - 31598732
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgca 184  Q
    ||||||||||||||||||||||||||||  |||||||  ||||||||    
T  31598778 ttaattgcacttttccccctatcttttgttaattgtgcgattttgca 31598732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 29074425 - 29074372
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||| |||| ||||||||  |||||||||||||  ||||||||||||    
T  29074425 ggcttaattgctctttcccccctatagtttgccaattgtgcgattttgcacccc 29074372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 29079189 - 29079136
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||| |||| ||||||||  |||||||||||||  ||||||||||||    
T  29079189 ggcttaattgctctttcccccctatagtttgccaattgtgcgattttgcacccc 29079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 29106998 - 29106945
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||| |||| ||||||||  |||||||||||||  ||||||||||||    
T  29106998 ggcttaattgctctttcccccctatagtttgccaattgtgcgattttgcacccc 29106945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 31598326 - 31598274
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||||||||| | ||||||| ||||||||||| |||||||  |||||||||||    
T  31598326 ggcttaattgtatttttccctctatcttttgctaattgtgcgattttgcaccc 31598274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 3930533 - 3930431
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctct 234  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||          ||||||||||||||||||||||||||||||| |    
T  3930533 ggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcaccccctcttttttttttagcgattttgcaccccatctttttgcccccttt 3930434  T
Q  235 ctg 237  Q
    |||    
T  3930433 ctg 3930431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 16555873 - 16555768
Alignment:
Q  133 ttggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccc 231  Q
    |||||||||||||||||||||||| |||||||||| |||||||  |||||||||||| ||         |||||||||||||||||||||||||||||||    
T  16555873 ttggcttaattgcacttttcccccttatcttttgctaattgtgcgattttgcaccccatctttttttttgagcgattttgcaccccatctttttgccccc 16555774  T
Q  232 tctctg 237  Q
    | ||||    
T  16555773 tttctg 16555768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 11241714 - 11241661
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  11241714 ggcttaattgtacttttccccctatcttttgccaattgtgggattttgcacccc 11241661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 22681570 - 22681631
Alignment:
Q  130 taattggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||  |||||||||||||||    
T  22681570 taattagcttaattgcactttcccccctatcttttgtcaattgtgcgattttgcaccccctc 22681631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 50678779 - 50678875
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  50678779 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 50678875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 43051306 - 43051215
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatcttttt 225  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |          |||||||||||||||||||||||||    
T  43051306 ggcttaattgcatttttcacccctatcttttgccaattgtgtgattttgcaccccatgtttttaaacgagcgattttgcaccccatcttttt 43051215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 50679481 - 50679382
Alignment:
Q  132 attggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    ||||||||||||||||||||| |||||||||||||||||||||   |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  50679481 attggcttaattgcacttttcacccctatcttttgccaattgtacgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 50679382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 36096531 - 36096433
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||| ||||||||||||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  36096531 ttggtttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatcttttttcccc 36096433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 13198606 - 13198707
Alignment:
Q  138 ttaattgcacttttccccct-atcttttgccaattgtgtaattttgcaccccctcnnnnnnnnn-gagcgattttgcaccccatctttttgccccctctc 235  Q
    ||||||||||||||| || | |||||||||||||||||  |||||||||||||||          |||||||||||||||||||||||||||||||| ||    
T  13198606 ttaattgcacttttctcctttatcttttgccaattgtgcgattttgcaccccctcttttttttttgagcgattttgcaccccatctttttgccccctttc 13198705  T
Q  236 tg 237  Q
    ||    
T  13198706 tg 13198707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 56505693 - 56505747
Alignment:
Q  135 ggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  56505693 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 56505747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 11529169 - 11529222
Alignment:
Q  136 gcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  11529169 gcttaattgcacttttcctccctaacttttgccaattgtgtgattttgcacccc 11529222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 35393829 - 35393741
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||| ||||||||||||| |||||||  | |||||||||||||         ||||||||||||||||||||||||    
T  35393829 ggcttaattgcacttttcaccctatcttttgctaattgtgcgaatttgcaccccctc-ttttttatgagcgattttgcaccccatctttt 35393741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 48405962 - 48406015
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||||||||  |||||||||| || |||||||||||||    
T  48405962 ggcttaattgcacttttccccctatagtttgccaattatgcaattttgcacccc 48406015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 49178866 - 49178813
Alignment:
Q  139 taattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  49178866 taattgcacttttctcccctatcttttgccaattgtgcgattttgcaccccctc 49178813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 13198960 - 13198870
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    |||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||         |||||||||||||||| |||||||    
T  13198960 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctcttttgttttgagcgattttgcaccctatctttt 13198870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 18077256 - 18077167
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatcttt 223  Q
    |||||||||||||||||| ||||||| |||||| |||||||  |||||||||||||||         ||||||||||||| |||||||||    
T  18077256 ggcttaattgcacttttcacccctattttttgctaattgtgcgattttgcaccccctcttttttgttgagcgattttgcatcccatcttt 18077167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 24775837 - 24775783
Alignment:
Q  135 ggcttaattgcacttttccc-cctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| ||||||||||| ||||||||  ||||||||||||    
T  24775837 ggcttaattgcacttttccctcctatcttttgtcaattgtgcgattttgcacccc 24775783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 36095817 - 36095871
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||| ||||| ||||||||||||||||||||||  ||||||||||||    
T  36095817 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcacccc 36095871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 4239423 - 4239366
Alignment:
Q  132 attggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  4239423 attggcttaattgcactttttccccctatagtttgccaattgtgcgattttgcacccc 4239366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 8181992 - 8182049
Alignment:
Q  136 gcttaattgcactttt-ccccctatc-ttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||    
T  8181992 gcttaattgcacttttgccccctatcgttttgccaattgtgcgattttgcaccccctc 8182049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 16555515 - 16555572
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||| |||||||||  |||||||  |||||||||||||||    
T  16555515 ggcttaattgcacttttcccccttatcttttgttaattgtgcgattttgcaccccctc 16555572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 26207361 - 26207414
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  26207361 ggcttaattgcactttcccccctatagtttgccaattgtgcgattttgcacccc 26207414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 54508815 - 54508868
Alignment:
Q  135 ggcttaattgcacttttccc-cctatcttttgccaattgtgtaattttgcaccc 187  Q
    ||||||||||||||||| || || |||||||||||||||||| |||||||||||    
T  54508815 ggcttaattgcactttttcctccaatcttttgccaattgtgtgattttgcaccc 54508868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 3930177 - 3930268
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    ||||||||||||||||||| ||||||||||||   |||| ||  |||||||||||||||         |||||||||||||||| |||||||    
T  3930177 ttggcttaattgcactttttcccctatcttttattaattatgcgattttgcaccccctctttttttttgagcgattttgcaccctatctttt 3930268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 8488534 - 8488447
Alignment:
Q  136 gcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttt 224  Q
    ||||||||||||||||| || |||||||| | |||||||  |||||||||||||||         ||||||||||||||||||||||||    
T  8488534 gcttaattgcacttttcgccttatctttttctaattgtgcgattttgcaccccctc-ttttttttgagcgattttgcaccccatctttt 8488447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 22681933 - 22681881
Alignment:
Q  135 ggcttaattgcacttttccc-cctatcttttgccaattgtgtaattttgcacc 186  Q
    |||||||||||||||||||| |||||||||||  ||||||| |||||||||||    
T  22681933 ggcttaattgcacttttccctcctatcttttgttaattgtgcaattttgcacc 22681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 32703706 - 32703650
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  32703706 ttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 32703650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 56506628 - 56506580
Alignment:
Q  135 ggcttaattgcacttttccccct-atcttttgccaattgtgtaattttg 182  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  56506628 ggcttaattgcacttttcacccttatcttttgccaattgtgcaattttg 56506580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 7603146 - 7603200
Alignment:
Q  136 gcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||| ||||||||   ||||||| ||||||||||||||||    
T  7603146 gcttaattgcacttttcccc-tatctttttttaattgtgcaattttgcaccccctc 7603200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 7603473 - 7603422
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcac 185  Q
    |||||||||||||||||| ||||||||||||  ||||||||  |||||||||    
T  7603473 tggcttaattgcactttttcccctatctttttacaattgtgcgattttgcac 7603422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 292782 - 292832
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgca 184  Q
    ||||||||||||||||| ||||||||  ||||||||||||| |||||||||    
T  292782 ggcttaattgcacttttcccccctatagtttgccaattgtgcaattttgca 292832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 9023244 - 9023298
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  9023244 ggcttaattgcacttttctcccctatagtttgccaattgtgcgattttgcacccc 9023298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 11241384 - 11241446
Alignment:
Q  130 taattggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||||||||| || |||||||||  |||||||  |||||||| ||||||    
T  11241384 taattggcttaattgcacttttcctccttatcttttgttaattgtgcgattttgcatcccctc 11241446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 27304716 - 27304773
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||| ||||||||| |||||| ||| |||||||  |||||||||||||||    
T  27304716 ttggcttaattgcccttttcccc-tatcttctgctaattgtgcgattttgcaccccctc 27304773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 28196346 - 28196400
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  28196346 ggcttaattgcacttttcccccctataatttgccaattgtgcgattttgcacccc 28196400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 28196827 - 28196773
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  28196827 ggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 28196773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 169004 - 169068
Alignment:
Q  126 aaaataattggcttaattgcacttttc--cccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||  ||||||||||||||||||  |||||||  |||||||||||||  ||||||||||||    
T  169004 aaaataaaaggcttaattgcacttttctccccctatagtttgccaattgtgcgattttgcacccc 169068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 23539841 - 23539893
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  23539841 ggcttaattgcacttt-ccccctatagtttgccaattgtgcgattttgcacccc 23539893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 25161879 - 25161932
Alignment:
Q  136 gcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  25161879 gcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcacccc 25161932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 11241673 - 11241641
Alignment:
Q  205 gattttgcaccccatctttttgccccctctctg 237  Q
    |||||||||||||||||||||||||||| ||||    
T  11241673 gattttgcaccccatctttttgccccctttctg 11241641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 25423 - 25327
Alignment:
Q  135 ggcttaattgcacttttccccc-tatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||||||| |||||||||| |||||||  |||||||||||||||         ||||||||||||||||||||||||||||||    
T  25423 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatctttttgcccc 25327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 17212 - 17153
Alignment:
Q  132 attggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  17212 attggcttaattgcacttttccccctatcttttgctaattgtgcaattttgcaccgcctc 17153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 16842 - 16908
Alignment:
Q  124 aaaaaataattggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||| ||||||||||||||||| ||||| |||||||||||||| |||||||  ||| |||||||||||    
T  16842 aaaatataattggcttaattgc-ctttttcccctatcttttgctaattgtgcgattatgcaccccctc 16908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 438928 - 439019
Alignment:
Q  133 ttggcttaattgcacttttcccc-ctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatcttt 223  Q
    ||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||         |||||||||||||||||||||||    
T  438928 ttggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccccatcttt 439019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 183367 - 183416
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    |||||||||||||||||||||||||||| |||||||   |||||||||||    
T  183367 ttaattgcacttttccccctatcttttgtcaattgtacgattttgcaccc 183416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 439263 - 439165
Alignment:
Q  125 aaaaataattggcttaattgcac-ttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatcttt 223  Q
    ||||||| | ||||||||||||| |||||||| |||||||||| |||||||  |||||||| ||||||         |||||||||||||||||||||||    
T  439263 aaaaatactaggcttaattgcactttttccccttatcttttgctaattgtgcgattttgcatcccctc--tttttttgagcgattttgcaccccatcttt 439166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1221 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 1509 - 1564
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||    
T  1509 ttggcttaattgcactttttcctctatcttttgccaattgtgtgattttgcacccc 1564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1221; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 1834 - 1781
Alignment:
Q  138 ttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||||||||||||||||||||   ||||||  |||||||||| ||||    
T  1834 ttaattgcacttttccccctatcttttgtttattgtgcgattttgcacctcctc 1781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 411923 - 412024
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgccccctct 234  Q
    |||||||||||||||| |||||||||||||| ||||||||  |||||||||||||||          ||||||||||||||| ||||||||||||||| |    
T  411923 ggcttaattgcactttaccccctatcttttgtcaattgtgcgattttgcaccccctctttttttta-agcgattttgcaccctatctttttgcccccttt 412021  T
Q  235 ctg 237  Q
    |||    
T  412022 ctg 412024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 50562 - 50506
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccc 189  Q
    |||||||||||||||||||||||||||  |||||||||||||  |||||||||||||    
T  50562 ttggcttaattgcacttttccccctatagtttgccaattgtgcgattttgcaccccc 50506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 50075 - 50127
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||||||| ||||||||  |||| |||||||| |||||||||||||    
T  50075 ggcttaattgcacttt-ccccctatagtttgtcaattgtgcaattttgcacccc 50127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 7654 - 7597
Alignment:
Q  134 tggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||||||||| |||||||||||||| |||||||  |||||| ||||||||    
T  7654 tggcttaattgcactttttcccctatcttttgctaattgtgcgattttgtaccccctc 7597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 7455 - 7508
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| |||||||||||||| |||| ||  ||||||||||||    
T  7455 ggcttaattgcactttttcccctatcttttgctaattatgcgattttgcacccc 7508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 6849 - 6753
Alignment:
Q  135 ggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||| ||||| ||||||||||||||||||||||  |||||||||||| |          ||||||||||||||||||||||||| ||||    
T  6849 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccccatctttttccccc 6753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 6150 - 6248
Alignment:
Q  133 ttggcttaattgcacttttc-cccctatcttttgccaattgtgtaattttgcaccccctcnnnnnnnnngagcgattttgcaccccatctttttgcccc 230  Q
    |||||||||||||||||||| || ||||||||||| |||||||  ||||| |||||| |          ||||||||||||||||||||||||| ||||    
T  6150 ttggcttaattgcacttttcacctctatcttttgctaattgtgcgattttacaccccatatttttaaatgagcgattttgcaccccatctttttccccc 6248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 205687 - 205743
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccccctc 191  Q
    |||||||||||| ||||| ||||||||||||| |||||||  |||||||||||||||    
T  205687 ggcttaattgcatttttctccctatcttttgctaattgtgcgattttgcaccccctc 205743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 6927 - 6877
Alignment:
Q  136 gcttaattgcacttttccccctatcttttgccaattgtgtaattttgcaccc 187  Q
    ||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  6927 gcttaattgcactttcccccctatcttttgccaattgtg-cattttgcaccc 6877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 818 - 763
Alignment:
Q  133 ttggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||| |||||||  |||||||||||||  ||||||||||||    
T  818 ttggcttaattgcactttttcccctatagtttgccaattgtgcgattttgcacccc 763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 185330 - 185274
Alignment:
Q  133 ttggcttaattgcacttttcc-ccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||||||| ||||||  |||||||||||||  ||||||||||||    
T  185330 ttggcttaattgcacttttcctccctatagtttgccaattgtgcgattttgcacccc 185274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 10012 - 10051
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgt 173  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  10012 ggcttaattgcacttttgccccctatcttttgccaattgt 10051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 38749 - 38695
Alignment:
Q  135 ggcttaattgcactttt-ccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    ||||||||||||||||| ||||||||  |||||||||||||  ||||||||||||    
T  38749 ggcttaattgcactttttccccctatagtttgccaattgtgcgattttgcacccc 38695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 19621 - 19674
Alignment:
Q  135 ggcttaattgcacttttccccctatcttttgccaattgtgtaattttgcacccc 188  Q
    |||||||||||| |||||||| |||  |||||||||||||  ||||||||||||    
T  19621 ggcttaattgcaattttccccatatagtttgccaattgtgcgattttgcacccc 19674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 72967 - 73023
Alignment:
Q  136 gcttaattgcacttttccccct-atcttttgccaattgtgtaattttgcaccccctc 191  Q
    ||||||||||| |||||||| | ||||||||| ||||||| ||||||||||| ||||    
T  72967 gcttaattgcatttttcccctttatcttttgctaattgtgcaattttgcaccgcctc 73023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University