View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12599_low_55 (Length: 243)
Name: NF12599_low_55
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6473761 - 6473984
Alignment:
| Q |
1 |
ttgtagtatgactatgttcttagtatttcataaaatagtcgaagtttgtaaaacagctatgctgtgacagttataatataattcctatatcgtagcgaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6473761 |
ttgtagtatgactatgttc---gtatttcataaaatagtcgaagtttgtaaaacagctatgctgtgacagttataatataattcctatatcgtagcgaag |
6473857 |
T |
|
| Q |
101 |
ttgaatagttgtggaggagggttattctcccagttattattgtagagaactggatttgttttaagcagtattcatgcctttagaccgaattatacttaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6473858 |
ttgaatagttgtggaggagggttattctcccagttattattgtagagaactggatttgttttaagcagtattcatgcctttagaccgaattatacttaat |
6473957 |
T |
|
| Q |
201 |
aattgagctactttcaatctatatgat |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6473958 |
aattgagctactttcaatctatatgat |
6473984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University