View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_56 (Length: 241)
Name: NF12599_low_56
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_56 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 20274256 - 20274035
Alignment:
| Q |
19 |
tgcaacacatattgaaccagcgcaaattagaaaaacaataggtattttccctagctgtcttgaataagaagaatgaaataaaagaatctcagaggaccaa |
118 |
Q |
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| T |
20274256 |
tgcaacacatattgaaccagcgcaaattagaataacaataggtattttccctagctgtcttgaataaaaagaatgaaacaaaagaatctcagaggaccag |
20274157 |
T |
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| Q |
119 |
ggaagagaagaaaaacaaagagtatatgcaggttaaaggtaattaagcataaaggcattagcgtgatgcattgtcaagaaaatagaaaagaata----gt |
214 |
Q |
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| T |
20274156 |
ggaagagaagaaaaccaaagagtatatgcaggttaaaggtaattaagcataaaggcat-----tgatgcattgtcaagaaattagaaaagaatataacat |
20274062 |
T |
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| Q |
215 |
agcaatagcaatatattacattctccc |
241 |
Q |
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||||||||||||||||||||||||||| |
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| T |
20274061 |
agcaatagcaatatattacattctccc |
20274035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 21060884 - 21060663
Alignment:
| Q |
19 |
tgcaacacatattgaaccagcgcaaattagaaaaacaataggtattttccctagctgtcttgaataagaagaatgaaataaaagaatctcagaggaccaa |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
21060884 |
tgcaacacatattgaaccagcgcaaattagaataacaataggtattttccctagctgtcttgaataaaaagaatgaaacaaaagaatctcagaggaccag |
21060785 |
T |
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| Q |
119 |
ggaagagaagaaaaacaaagagtatatgcaggttaaaggtaattaagcataaaggcattagcgtgatgcattgtcaagaaaatagaaaagaata----gt |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | |
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| T |
21060784 |
ggaagagaagaaaaccaaagagtatatgcaggttaaaggtaattaagcataaaggcat-----tgatgcattgtcaagaaattagaaaagaatataacat |
21060690 |
T |
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| Q |
215 |
agcaatagcaatatattacattctccc |
241 |
Q |
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||||||||||||||||||||||||||| |
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| T |
21060689 |
agcaatagcaatatattacattctccc |
21060663 |
T |
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