View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12599_low_57 (Length: 241)
Name: NF12599_low_57
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_57 |
 | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0111 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42276 - 42051
Alignment:
| Q |
1 |
ctttgcaaaaaatatttcgttatggctgggcgatctccttcataccccttttgatatagtatcttttgcggccctgcttggttctattccgcaaaattgt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42276 |
ctttgcaaaaaatatttggttatggctgggcgatctccttcataccccttttaatatagtatcttttgcggccctgcttggttctattccgcaaaattgt |
42177 |
T |
|
| Q |
101 |
tcttcccaaattcatgacatccatttgcatgcggtaattcactctctttatggtatttggatggcgcggaattctt--tgtttcactaaccaaatggcct |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
42176 |
tcttcccaaattcatgacatccatttgcatgcggtaattcactctcttcatggtatttggatggcgcggaattctttgtgtttcactgaccaaacggcct |
42077 |
T |
|
| Q |
199 |
ctttgcactcgacaaaggttcgtatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
42076 |
ctttgcactcgacaaaggttcgtatt |
42051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 21028077 - 21027852
Alignment:
| Q |
1 |
ctttgcaaaaaatatttcgttatggctgggcgatctccttcataccccttttgatatagtatcttttgcggccctgcttggttctattccgcaaaattgt |
100 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21028077 |
ctttgcaaagaatatttggttatggctgggcggtctccttcataccccttttgacatactatcttttgcggccctgcttggttctattccgcaaaattgt |
21027978 |
T |
|
| Q |
101 |
tcttcccaaattcatgacatccatttgcatgcggtaattcactctctttatggtatttggatggcgcggaattcttt--gtttcactaaccaaatggcct |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
21027977 |
tcttcccaaattcatgacatccatttggctgcggtaattcactctcttcatggtatttggatggcgcggaattctttgcgtttcactgaccaaacagcct |
21027878 |
T |
|
| Q |
199 |
ctttgcactcgacaaaggttcgtatt |
224 |
Q |
| |
|
|||| |||||||||||||||| |||| |
|
|
| T |
21027877 |
ctttacactcgacaaaggttcatatt |
21027852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 21488880 - 21488655
Alignment:
| Q |
1 |
ctttgcaaaaaatatttcgttatggctgggcgatctccttcataccccttttgatatagtatcttttgcggccctgcttggttctattccgcaaaattgt |
100 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21488880 |
ctttgcaacgaatatttggttatggctgggcggtctccttcatactccttttgacataggttcttttgcggccctgcttggctctattccgcaaaattgt |
21488781 |
T |
|
| Q |
101 |
tcttcccaaattcatgacatccatttgcatgcggtaattcactctctttatggtatttggatggcgcggaattcttt--gtttcactaaccaaatggcct |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
21488780 |
tcttcccaaattcatgacatccatttggctgcggtaattcactccctccatggtatttggatgacgcggaattctttgagtttcactgaccaaacggcct |
21488681 |
T |
|
| Q |
199 |
ctttgcactcgacaaaggttcgtatt |
224 |
Q |
| |
|
|||| ||||| ||||||||||||||| |
|
|
| T |
21488680 |
ctttacactccacaaaggttcgtatt |
21488655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 20435064 - 20434952
Alignment:
| Q |
97 |
ttgttcttcccaaattcatgacatccatttgcatgcggtaattcactctctttatggtatttggatggcgcggaattctt-tgtttcactaaccaaatgg |
195 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||| |||||||| |||||| || |
|
|
| T |
20435064 |
ttgttcatcccaaattcatgacatccatttggctgcggtaattcactctcttcatggtatttggctggcgcagaattcttgtgtttcaccgaccaaacgg |
20434965 |
T |
|
| Q |
196 |
cctctttgcactc |
208 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20434964 |
tctctttgcactc |
20434952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 20374876 - 20374771
Alignment:
| Q |
104 |
tcccaaattcatgacatccatttgcatgcggtaattcactctctttatggtatttggatggcgcggaattctt-tgtttcactaaccaaatggcctcttt |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | | ||||||||||| ||||||| |||||| || |||||| |
|
|
| T |
20374876 |
tcccaaattcatgacatccatttggttgcggtaattcactctcttcatggtatttggttagagcggaattcttgcgtttcaccgaccaaacggtctcttt |
20374777 |
T |
|
| Q |
203 |
gcactc |
208 |
Q |
| |
|
|||||| |
|
|
| T |
20374776 |
gcactc |
20374771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University