View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_59 (Length: 240)
Name: NF12599_low_59
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 2757431 - 2757619
Alignment:
| Q |
25 |
taatcgtcacaatgggtcctaaaatttagagtacttaattaatcaaaatnnnnnnngcagcaaattccattttgattttgaattaagtcttgaattggat |
124 |
Q |
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| T |
2757431 |
taatcgtcacaatgggtcctaaaatttagagtacttaattaatcaaaataaaaaa-gcagcaaattccattttgattttgaattaagtcttgaattggat |
2757529 |
T |
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| Q |
125 |
tgttgaattcaaatgtggcaaaaagttgttcaagatccttaaataaattaataaagctttccataaaaaggaaaaagagctacctaatcc |
214 |
Q |
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| T |
2757530 |
tgttgaattcaaatgtggcaaaaagttgttcaagatccttaaataaattaatcaagctttccataaaaaggaaaaagagctacctaatcc |
2757619 |
T |
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