View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_6 (Length: 631)
Name: NF12599_low_6
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Original strand, 26872009 - 26872624
Alignment:
| Q |
1 |
aatataacatggtttgttaagaactactcttggacagtagtgaatgtaagagactaagaaaagtgaaggagaaacatttttctctttaggctaccacagt |
100 |
Q |
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| T |
26872009 |
aatataacatggtttgttaagaactactcttggacagtagtgaatgtaagagactaagaaaagtgaaggagaaacatttttctctttaggctaccacagt |
26872108 |
T |
|
| Q |
101 |
aactgttatgcttaattcttgtagttgttgcttcttttgctgtcaaaggcttcaagtagtggtacagcgtctttcaaaaagctcaaatctagcttttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26872109 |
aactgttatgcttaattcttgtagttgttgcttcttttgctgtcaaaggcttcaagtagtggtacagcgtctttcaaaaagctcaaatctagcttttttg |
26872208 |
T |
|
| Q |
201 |
tgagcacaggggaagaggatcgtcgtgcgactgttcctcttccaagggaaagaagaatatcttcaaacaggaactcatcacaaggtatagacagaggacc |
300 |
Q |
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| T |
26872209 |
tgagcacaggggaagaggatcgtcgtgcgactgttcctcctccaagggaaagaagaatatcttcaaacaggaactcatcacaaggtatagacagaggacc |
26872308 |
T |
|
| Q |
301 |
actcttgttgaagccatatccttcgtatgcctggtctagcagttcttgaagaactggatggttcaggtagtcagctcttatcacaaacctcctgtttgtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26872309 |
actcttgttgaagccatatccttcgtatgcctggtctagcagttcttgaagaactggatggttcaggtagtcagctcttatcacaaacctcctgtttgtc |
26872408 |
T |
|
| Q |
401 |
tctcctactgtcacggccaagtgacctcgcggtacgtctgacggaagtttcttcccgctgcaggcattcttacgccacatgcatgccatacttc-nnnnn |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26872409 |
tctcctactgtcacggccaagtgacctcgcggtacgtctgacggcagtttcttcccgctgcaggcattcttacgccacatgcatgccatacttctttttt |
26872508 |
T |
|
| Q |
500 |
nncagctgcagtgttaatgttgaggatgaagttcttggtgttggattatactccaacttgatacactctacacttatatattatgctctattgttccatc |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26872509 |
ttcagctgcagtgttaatgttgaggatgaagttcttggtgttggattatactccaacttgatacactctacactcatatattatgctctattgttccatc |
26872608 |
T |
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| Q |
600 |
tgacaagttttgagac |
615 |
Q |
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|||||||||||||||| |
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| T |
26872609 |
tgacaagttttgagac |
26872624 |
T |
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