View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12599_low_9 (Length: 587)

Name: NF12599_low_9
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12599_low_9
NF12599_low_9
[»] chr5 (4 HSPs)
chr5 (22-573)||(15057189-15057740)
chr5 (235-313)||(31669023-31669100)
chr5 (238-313)||(16172982-16173056)
chr5 (235-315)||(34984806-34984886)
[»] chr1 (8 HSPs)
chr1 (235-305)||(37046985-37047054)
chr1 (235-313)||(15581140-15581217)
chr1 (235-342)||(34228874-34228981)
chr1 (235-340)||(36371470-36371576)
chr1 (235-305)||(39012291-39012360)
chr1 (233-274)||(952509-952550)
chr1 (235-315)||(2219972-2220052)
chr1 (233-269)||(19940914-19940950)
[»] chr8 (5 HSPs)
chr8 (235-301)||(22268944-22269009)
chr8 (235-313)||(6530807-6530884)
chr8 (234-306)||(26688864-26688936)
chr8 (235-306)||(11979252-11979323)
chr8 (258-326)||(40136948-40137015)
[»] chr4 (15 HSPs)
chr4 (231-305)||(42281240-42281313)
chr4 (235-327)||(29195095-29195187)
chr4 (234-313)||(56409950-56410028)
chr4 (239-313)||(37980146-37980219)
chr4 (235-305)||(5795415-5795485)
chr4 (234-281)||(10538805-10538852)
chr4 (234-305)||(38206132-38206202)
chr4 (235-313)||(17701875-17701952)
chr4 (235-313)||(21344817-21344894)
chr4 (234-311)||(37455568-37455645)
chr4 (235-276)||(6606058-6606099)
chr4 (260-332)||(13017747-13017819)
chr4 (238-340)||(7292768-7292871)
chr4 (235-345)||(37109316-37109427)
chr4 (235-267)||(49225474-49225506)
[»] chr3 (12 HSPs)
chr3 (236-313)||(18316497-18316573)
chr3 (237-306)||(42799753-42799821)
chr3 (235-340)||(40268489-40268594)
chr3 (234-311)||(24478154-24478230)
chr3 (235-315)||(53863864-53863943)
chr3 (222-276)||(26871539-26871593)
chr3 (281-327)||(36660808-36660854)
chr3 (235-269)||(47079701-47079735)
chr3 (235-276)||(3054994-3055035)
chr3 (235-279)||(7207610-7207654)
chr3 (235-311)||(34844371-34844446)
chr3 (238-340)||(53412948-53413051)
[»] chr2 (5 HSPs)
chr2 (235-326)||(3697384-3697475)
chr2 (235-274)||(41138327-41138366)
chr2 (235-313)||(26482093-26482170)
chr2 (255-343)||(25384556-25384644)
chr2 (235-326)||(342395-342486)
[»] scaffold0258 (1 HSPs)
scaffold0258 (233-326)||(15307-15401)
[»] chr7 (7 HSPs)
chr7 (235-306)||(48125180-48125250)
chr7 (235-275)||(35328910-35328950)
chr7 (235-332)||(22760863-22760961)
chr7 (235-274)||(22932748-22932787)
chr7 (235-340)||(43215184-43215290)
chr7 (235-275)||(5273626-5273666)
chr7 (235-275)||(38374635-38374675)
[»] chr6 (2 HSPs)
chr6 (235-279)||(14557962-14558006)
chr6 (235-300)||(22683-22747)
[»] scaffold0260 (1 HSPs)
scaffold0260 (235-269)||(15363-15397)


Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 22 - 573
Target Start/End: Complemental strand, 15057740 - 15057189
Alignment:
Q  22 gatgaatagccttatcaaagccgagttttctcactgctttgctctcatggaaggcctgctatctctacttttccctcgtaaagccaaagacaaagagatt 121  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15057740 gatgaatagccttatcgaagccgagttttctcactgctttgctctcatggaaggcctgctatctctacttttccctcgtaaagccaaagacaaagagatt 15057641  T
Q  122 actccccctgaagatgaacacatatctgactgctttcctgttttgatcttcaagatattggttttgagttagtacttttttcctatctccctcacactta 221  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  15057640 actccccctgaatatgaacacatatctgactgctttcccgttttgatcttcaagatattttttttgagttagtacttttttcctatctccctcacactta 15057541  T
Q  222 gtttctttttcacaacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctca-ggttccattctctcgatgc 320  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  15057540 ttttctttttcacaacccacttgggttggtatggtggtgttggcttggaaccttgaagttttgctcttctcaaggtctcagggtttcattctctcgatgc 15057441  T
Q  321 caattttagtggattagtttggtttttgnnnnnnnntataacttactttctttatccattttacttcattgctcatcttatcttgttgctttctttcttg 420  Q
    |||||| |||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15057440 caatttcagtggattagtttggtttttgaaaaaaaatataactta-tttctttatccattttacttcattgctcatcttatcttgttgctttctttcttg 15057342  T
Q  421 atttaggtttaattggctacattgcccttgtacccataacaactatttcctcagatttgtacaaggtatcacaatcaatccacttacaatttgtatacaa 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15057341 atttaggtttaattggctacattgcccttgtacccataacaactatttcctctgatttgtacaaggtatcacaatcaatccacttacaatttgtatacaa 15057242  T
Q  521 tatgattattgttattactagggtttcacaatattcatattttatgaattaac 573  Q
    ||||||| |||||||||||||||||||||||||||| | |||| |||||||||    
T  15057241 tatgatttttgttattactagggtttcacaatattctttttttctgaattaac 15057189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 31669100 - 31669023
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    ||||||||||||||||| || |||||||||||||| |||||| || | ||||| ||||||||||| |||||| ||||||    
T  31669100 aacccacttgggttggtctgatggtgttggcttgggaccttggag-tctgctcctctcaaggtcttaggttcgattctc 31669023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 16173056 - 16172982
Alignment:
Q  238 ccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    |||||||||||||  |||| |||||||||||  |||||| || | ||||| |||||||||||||||||| ||||||    
T  16173056 ccacttgggttggcctggtagtgttggcttgagaccttggag-tgtgctcctctcaaggtctcaggttcgattctc 16172982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 34984806 - 34984886
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttccattctctc 315  Q
    ||||||||||||||||| | ||||| |||||||||||||| | || | |||| || |||||||||| |||||| ||||||||    
T  34984806 aacccacttgggttggtctagtggtattggcttggaacctgggag-tgtgctcctcctcaaggtcttaggttcgattctctc 34984886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 37046985 - 37047054
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggtt 305  Q
    ||||||||||||||||| ||||||||||||||||| |||||| || | ||||| |||||||||||||||||    
T  37046985 aacccacttgggttggtctggtggtgttggcttgggaccttggag-tgtgctcctctcaaggtctcaggtt 37047054  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 15581217 - 15581140
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    ||||||||||||||||  ||||||||||||||||| |||||| || | ||||| ||| |||||||||||||| ||||||    
T  15581217 aacccacttgggttggcctggtggtgttggcttgggaccttggag-tgtgctcctctaaaggtctcaggttcaattctc 15581140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 34228874 - 34228981
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctct-cgatgccaattttagtgga 333  Q
    |||||||||| |||||| ||||||||||||||||| |||| | || | || || |||||||||||||||||  ||||||| || |||||||||| ||||     
T  34228874 aacccacttgagttggtctggtggtgttggcttgggacctcggag-tgtgttcctctcaaggtctcaggttggattctctccggtgccaattttggtggg 34228972  T
Q  334 ttagtttgg 342  Q
     ||||||||    
T  34228973 ctagtttgg 34228981  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 36371470 - 36371576
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttccattctctc-gatgccaattttagtgg 332  Q
    ||||||||||||||||  | ||||| |||||||||||||| | || | |||| || |||||||||| |||||| |||||||| ||||||||||| || ||    
T  36371470 aacccacttgggttggcctagtggtattggcttggaacctgggag-tgtgctcctcctcaaggtctgaggttcgattctctctgatgccaatttgagggg 36371568  T
Q  333 attagttt 340  Q
     |||||||    
T  36371569 gttagttt 36371576  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 39012291 - 39012360
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggtt 305  Q
    ||||||||| ||||||  | ||||||||||||||| |||||| || | ||||||||||||||||| |||||    
T  39012291 aacccactttggttggcctagtggtgttggcttgggaccttggag-tgtgctcttctcaaggtcttaggtt 39012360  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 952509 - 952550
Alignment:
Q  233 acaacccacttgggttggtatggtggtgttggcttggaacct 274  Q
    |||||||||||| |||||| ||||||||||||||||| ||||    
T  952509 acaacccacttgagttggtctggtggtgttggcttgggacct 952550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 2219972 - 2220052
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttccattctctc 315  Q
    ||||||||||||||| | ||||||| ||||||||||||||  ||| | |||| || ||| ||||||||||||| ||||||||    
T  2219972 aacccacttgggttgttctggtggtattggcttggaacctgaaag-tgtgcttctcctcgaggtctcaggttcgattctctc 2220052  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 19940950 - 19940914
Alignment:
Q  233 acaacccacttgggttggtatggtggtgttggcttgg 269  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  19940950 acaacccacttgggttggtctggtggtgttagcttgg 19940914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 22269009 - 22268944
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctca 301  Q
    ||||||||||||||||  ||||||||||||||||| |||||| || | |||||||||||||||||||    
T  22269009 aacccacttgggttggcctggtggtgttggcttgggaccttggag-tgtgctcttctcaaggtctca 22268944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 6530807 - 6530884
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    ||||||||||||||||  ||||||||||||||||| |||| | || | ||||| |||||| ||||||||||| ||||||    
T  6530807 aacccacttgggttggcctggtggtgttggcttgggacctaggag-tgtgctcctctcaatgtctcaggttcgattctc 6530884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 26688864 - 26688936
Alignment:
Q  234 caacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttc 306  Q
    |||||||||||||||||  ||||||||||||||||| |||||| || | |||| || |||||||||||||||||    
T  26688864 caacccacttgggttggcctggtggtgttggcttgggaccttggag-tgtgctcctcctcaaggtctcaggttc 26688936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 11979252 - 11979323
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgc-tcttctcaaggtctcaggttc 306  Q
    ||||||||||||||||| ||| ||||||| ||||| ||||||||| | ||| |||||||||||||| ||||||    
T  11979252 aacccacttgggttggtttggcggtgttgacttgggaccttgaag-tgtgcttcttctcaaggtcttaggttc 11979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 40137015 - 40136948
Alignment:
Q  258 gtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctctcgatgccaattt 326  Q
    |||||||||||| |||||| || | ||||| |||||||||||||||||  |||||| || |||||||||    
T  40137015 gtgttggcttgggaccttggag-tgtgctcctctcaaggtctcaggtttgattctcccggtgccaattt 40136948  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 42281313 - 42281240
Alignment:
Q  231 tcacaacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggtt 305  Q
    ||||||||||||||||||||   |||||||||||||||| |||||| || | ||||| |||||||||||||||||    
T  42281313 tcacaacccacttgggttggccaggtggtgttggcttgggaccttgtag-tgtgctcctctcaaggtctcaggtt 42281240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 29195095 - 29195187
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctctc-gatgccaatttt 327  Q
    ||||||||||||||||  ||||||||||||||||| |||||| || | ||||| |||||||||| || |||| ||||||||  |||||||||||    
T  29195095 aacccacttgggttggcctggtggtgttggcttgggaccttggag-tgtgctcctctcaaggtcgcaagttcgattctctctaatgccaatttt 29195187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 56409950 - 56410028
Alignment:
Q  234 caacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    ||||||||||||| |||  ||||| ||||||||||| |||||| || | ||||| |||||||||||||||||| ||||||    
T  56409950 caacccacttgggctggcctggtgctgttggcttgggaccttggag-tgtgctcctctcaaggtctcaggttcgattctc 56410028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 37980219 - 37980146
Alignment:
Q  239 cacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    ||||||||||||  ||||| ||||||||||| |||||| || | ||||| |||||||||||||||||| ||||||    
T  37980219 cacttgggttggcctggtgatgttggcttgggaccttggag-tgtgctcctctcaaggtctcaggttcgattctc 37980146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 5795485 - 5795415
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggtt 305  Q
    ||||||||||||||||| ||||||||||| ||||| |||||| || | |||| || ||||||||||||||||    
T  5795485 aacccacttgggttggtctggtggtgttgacttggcaccttggag-tatgctcctcctcaaggtctcaggtt 5795415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 10538805 - 10538852
Alignment:
Q  234 caacccacttgggttggtatggtggtgttggcttggaaccttgaagat 281  Q
    ||||||||||| |||||| ||||||||||||||||  |||||||||||    
T  10538805 caacccacttgagttggtctggtggtgttggcttgagaccttgaagat 10538852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 38206202 - 38206132
Alignment:
Q  234 caacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggtt 305  Q
    ||||||||||||||||   |||||||| |||||||| |||||| || | ||||| |||||||||||||||||    
T  38206202 caacccacttgggttgacctggtggtgctggcttgggaccttggag-tgtgctcctctcaaggtctcaggtt 38206132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 17701875 - 17701952
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    ||||||||||||||| || |||||||||||||||  || ||| | || ||||| |||||||||||||| ||| ||||||    
T  17701875 aacccacttgggttgctacggtggtgttggcttgagactttgga-atgtgctcctctcaaggtctcagattcgattctc 17701952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 21344817 - 21344894
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    ||||||||||||||||  || || ||||||||||| |||||| || | ||||| ||||||||||||| |||| ||||||    
T  21344817 aacccacttgggttggcctgatgatgttggcttgggaccttggag-tgtgctcctctcaaggtctcatgttcaattctc 21344894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 37455568 - 37455645
Alignment:
Q  234 caacccacttgggttggtatggtggtgttggcttggaacctt-gaagatttgctcttctcaaggtctcaggttccattc 311  Q
    ||||| |||||||||||  ||||||||||||||||| ||||| | || | ||||| |||||||||||||||||| ||||    
T  37455568 caaccaacttgggttggcctggtggtgttggcttgggacctttggag-tatgctcctctcaaggtctcaggttcgattc 37455645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 6606058 - 6606099
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttg 276  Q
    ||||||||||||||||| || |||||||||||||| ||||||    
T  6606058 aacccacttgggttggtctgatggtgttggcttgggaccttg 6606099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 13017747 - 13017819
Alignment:
Q  260 gttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctctc-gatgccaattttagtgg 332  Q
    |||||||||||| ||||||| | || || ||||||||||||||||||||||| ||| | |||||||||| ||||    
T  13017747 gttggcttggaatcttgaag-tgtgttcctctcaaggtctcaggttccattccctctgttgccaattttggtgg 13017819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 340
Target Start/End: Complemental strand, 7292871 - 7292768
Alignment:
Q  238 ccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttccattctctcga-tgccaattttagtggatt 335  Q
    |||||||||||||| | ||||| |||||||||||||| | || | |||| || ||||| ||||||||||| |||||||| | ||||||||| || || ||    
T  7292871 ccacttgggttggtctagtggtattggcttggaacctgggag-tgtgctcctcctcaaagtctcaggttcgattctctctagtgccaatttgagggggtt 7292773  T
Q  336 agttt 340  Q
    |||||    
T  7292772 agttt 7292768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 37109427 - 37109316
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttccattctctc-gatgccaattttagtgg 332  Q
    ||||||||||||||||  | ||||| ||||||||| |||| | || | |||| || ||||||||||||||||| |||||||| | ||||||||| || ||    
T  37109427 aacccacttgggttggcctagtggtattggcttgggacctgggag-tgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggg 37109329  T
Q  333 attagtttggttt 345  Q
     ||||||| ||||    
T  37109328 gttagtttagttt 37109316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 49225506 - 49225474
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggctt 267  Q
    ||||||||||||||||| |||||||||||||||    
T  49225506 aacccacttgggttggtctggtggtgttggctt 49225474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 18316573 - 18316497
Alignment:
Q  236 acccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    |||||||||||||||| |||||||| |||||||| |||||| || | ||||| ||||||||||| |||||| ||||||    
T  18316573 acccacttgggttggtctggtggtgctggcttgggaccttggag-tgtgctcctctcaaggtcttaggttcgattctc 18316497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 42799821 - 42799753
Alignment:
Q  237 cccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttc 306  Q
    ||||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||||||||||||||||    
T  42799821 cccacttgggttggcctggtggtgttggcttgggaccttggag-tgtgctcctctcaaggtctcaggttc 42799753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 40268489 - 40268594
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattct-ctcgatgccaattttagtgga 333  Q
    |||||||||||||| |  ||||||||||||||||| |||||| || |  |||| ||| |||||||||||||| ||||| | ||||||||||||  ||||     
T  40268489 aacccacttgggtttgcctggtggtgttggcttgggaccttggag-tgggctcctcttaaggtctcaggttcgattctccccgatgccaatttcggtggg 40268587  T
Q  334 ttagttt 340  Q
    |||||||    
T  40268588 ttagttt 40268594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 24478154 - 24478230
Alignment:
Q  234 caacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattc 311  Q
    |||||||||||||||||| ||||||| ||||||||| || |||||| | | ||| |||||||||||| ||||| ||||    
T  24478154 caacccacttgggttggtttggtggtattggcttggtactttgaag-tgttctcctctcaaggtctcgggttcaattc 24478230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 53863943 - 53863864
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctctc 315  Q
    |||||||||||||||   ||||| ||||||||||| |||||| || | ||||| ||||||||||| |||||| ||||||||    
T  53863943 aacccacttgggttgtcctggtgatgttggcttgggaccttggag-tgtgctcctctcaaggtcttaggttcaattctctc 53863864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 26871593 - 26871539
Alignment:
Q  222 gtttctttttcacaacccacttgggttggtatggtggtgttggcttggaaccttg 276  Q
    |||||||||  | ||||||||||||||||  ||||||||||||||||| ||||||    
T  26871593 gtttcttttataaaacccacttgggttggcctggtggtgttggcttgggaccttg 26871539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 36660808 - 36660854
Alignment:
Q  281 tttgctcttctcaaggtctcaggttccattctctcgatgccaatttt 327  Q
    ||||||| |||||||||||||||||| |||||| || ||||||||||    
T  36660808 tttgctcctctcaaggtctcaggttcaattctcccgttgccaatttt 36660854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 47079701 - 47079735
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttgg 269  Q
    ||||||||||||||||| |||||||||||||||||    
T  47079701 aacccacttgggttggtctggtggtgttggcttgg 47079735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 3054994 - 3055035
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttg 276  Q
    ||||||||||||||||  ||||||||||||||||| ||||||    
T  3054994 aacccacttgggttggcctggtggtgttggcttgggaccttg 3055035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 7207610 - 7207654
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaag 279  Q
    ||||||||||||||||  ||||||||||| ||||| |||||||||    
T  7207610 aacccacttgggttggcttggtggtgttgccttgggaccttgaag 7207654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 34844371 - 34844446
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattc 311  Q
    |||||||||||||||   ||||| ||||||||||  |||||| || | ||||| |||||||||||||||||| ||||    
T  34844371 aacccacttgggttgccctggtgttgttggcttgagaccttggag-tgtgctcctctcaaggtctcaggttcgattc 34844446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 340
Target Start/End: Original strand, 53412948 - 53413051
Alignment:
Q  238 ccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttccattctctc-gatgccaattttagtggatt 335  Q
    |||||||||||||| | ||||| |||||||| ||||| | || | |||| || ||||||||||||||||| |||||||| | ||||||||| || || ||    
T  53412948 ccacttgggttggtctagtggtattggcttgtaacctgggag-tgtgctcctcctcaaggtctcaggttcaattctctctggtgccaatttgagggggtt 53413046  T
Q  336 agttt 340  Q
    |||||    
T  53413047 agttt 53413051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 326
Target Start/End: Complemental strand, 3697475 - 3697384
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattct-ctcgatgccaattt 326  Q
    ||||||||||||||||| || |||| ||||||||| |||||| |||  ||||| |||||||||||| ||||| ||||| |||| |||||||||    
T  3697475 aacccacttgggttggtctgatggtattggcttgggaccttggaga-gtgctcctctcaaggtctctggttcgattctcctcggtgccaattt 3697384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 41138327 - 41138366
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaacct 274  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  41138327 aacccacttgggttggtatggtggtgttgacttagaacct 41138366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 26482093 - 26482170
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattctc 313  Q
    ||||||||| ||||||  || |||||||||||||| |||| | || | ||||| |||||||||||||||||| ||||||    
T  26482093 aacccacttaggttggcctgatggtgttggcttgggacctaggag-tgtgctcctctcaaggtctcaggttcgattctc 26482170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 343
Target Start/End: Original strand, 25384556 - 25384644
Alignment:
Q  255 gtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattct-ctcgatgccaattttagtggattagtttggt 343  Q
    ||||||||||||||| |||||| || | ||||| ||||| |||||| ||||| ||| | |||| |||||||||| |||| ||||||||||    
T  25384556 gtggtgttggcttgggaccttggag-tgtgctcctctcagggtctcgggttcgattatgctcggtgccaattttggtgggttagtttggt 25384644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 342395 - 342486
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttccattct-ctcgatgccaattt 326  Q
    ||||||||||||||||  ||||||||||||||||  |||||| || | | ||| || |||||||||| |||| ||||| |||| |||||||||    
T  342395 aacccacttgggttggcctggtggtgttggcttgtgaccttggag-tgtactcatcgcaaggtctcaagttcaattctcctcggtgccaattt 342486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 15401 - 15307
Alignment:
Q  233 acaacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttccattctctc-gatgccaattt 326  Q
    ||||||||||||||||||| ||||||| ||||||||| |||| | || | |||| || ||| ||||||||||||| |||||||| |||||||||||    
T  15401 acaacccacttgggttggtctggtggtattggcttgggacctgggag-tgtgctcctcctcgaggtctcaggttcgattctctcggatgccaattt 15307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 48125250 - 48125180
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctcaggttc 306  Q
    ||||||||||||||||| ||||||||||||||||| |||||| || | ||||| ||  ||||||||||||||    
T  48125250 aacccacttgggttggtctggtggtgttggcttgggaccttggag-tgtgctcctccgaaggtctcaggttc 48125180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 35328950 - 35328910
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaacctt 275  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  35328950 aacccacttgggttggcctggtggtgttggcttggaacctt 35328910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 22760863 - 22760961
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttccattct-ctcgatgccaattttagtgg 332  Q
    ||||||||||||||||| ||||||| ||| ||||| |||| | || | |||| || ||||||||||||||||| ||||| | |||||||||||| |||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggag-tgtgctcctcctcaaggtctcaggttcgattctccccgatgccaatttgagtgg 22760961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 22932787 - 22932748
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaacct 274  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  22932787 aacccacttgggttggtatggtggtattggcttgggacct 22932748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 43215184 - 43215290
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgct-cttctcaaggtctcaggttccattctctc-gatgccaattttagtgg 332  Q
    ||||||||||||||||| | ||||| ||||||||| |||| | || | |||| || ||||||||||||||||| ||||||||  |||||||||| || ||    
T  43215184 aacccacttgggttggtctagtggtattggcttgggacctcggag-tgtgctcctcctcaaggtctcaggttcgattctctcttatgccaatttgagggg 43215282  T
Q  333 attagttt 340  Q
     |||||||    
T  43215283 gttagttt 43215290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 5273666 - 5273626
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaacctt 275  Q
    ||||||||||||||||  ||||||||||||||||| |||||    
T  5273666 aacccacttgggttggcctggtggtgttggcttgggacctt 5273626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 38374675 - 38374635
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaacctt 275  Q
    ||||||||||||||||  ||||||||||||||||| |||||    
T  38374675 aacccacttgggttggcgtggtggtgttggcttgggacctt 38374635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 14557962 - 14558006
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaag 279  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||    
T  14557962 aacccacttgggttggtctggtggtgttggcttgggacctggaag 14558006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 22747 - 22683
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttggaaccttgaagatttgctcttctcaaggtctc 300  Q
    ||||||||||||||||  | ||||| ||||||||| |||||| || | ||||||||||||||||||    
T  22747 aacccacttgggttgggctagtggttttggcttgggaccttggag-tgtgctcttctcaaggtctc 22683  T

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Target: scaffold0260 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 15397 - 15363
Alignment:
Q  235 aacccacttgggttggtatggtggtgttggcttgg 269  Q
    ||||||||||||||||| |||||||||||||||||    
T  15397 aacccacttgggttggtctggtggtgttggcttgg 15363  T

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