View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_high_20 (Length: 273)
Name: NF1259_high_20
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 48 - 244
Target Start/End: Complemental strand, 33302632 - 33302436
Alignment:
| Q |
48 |
atcatgggaaccttttttcgagcagactattgctatggcaagaaatgttcacaaatataagtacagaatgggagtagggtatagaccagatgaggatggt |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33302632 |
atcatgggaaccttttttcgagcagactattgctatggcaagaaatgttcacaaatataaatacagaatgggagtagggtatagaccagatgaggatggt |
33302533 |
T |
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| Q |
148 |
acaattactgaaaattactgggagcaagtgaatgaggcagaagaacatcatactcaaaagccttatagaattgagctagttggtgtcgtctgtgatg |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33302532 |
acaattactgaaaattactgggagcaagtgaatgaggcagaagaacatcatactcaaaagccttatagaattgagctagttggtgtcgtttgtgatg |
33302436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 33250721 - 33250572
Alignment:
| Q |
48 |
atcatgggaaccttttttcgagcagactattgctatggcaagaaatgttcacaaatataagtacagaatgggagtagggtatagaccagatgaggatggt |
147 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| | || || ||||||| |
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| T |
33250721 |
atcatgggaaccttttgtggagcagactattgctatggcaagaaatgttcacaaacataagtacagaatgggggtaggatataaagtagctgcggatggt |
33250622 |
T |
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| Q |
148 |
acaattactgaaaattactgggagcaagtgaatgaggcagaagaacatca |
197 |
Q |
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| T |
33250621 |
acaattaatgaaaattactgggagcaagtgaatgagggagaagaacatca |
33250572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 33270893 - 33270744
Alignment:
| Q |
48 |
atcatgggaaccttttttcgagcagactattgctatggcaagaaatgttcacaaatataagtacagaatgggagtagggtatagaccagatgaggatggt |
147 |
Q |
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|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| | || || ||||||| |
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| T |
33270893 |
atcatgggaaccttttgtggagcagactattgctatggcaagaaatgttcacaaacataagtacagaatgggggtaggatataaagtagctgcggatggt |
33270794 |
T |
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| Q |
148 |
acaattactgaaaattactgggagcaagtgaatgaggcagaagaacatca |
197 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33270793 |
acaattaatgaaaattactgggagcaagtgaatgagggagaagaacatca |
33270744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 33310618 - 33310472
Alignment:
| Q |
48 |
atcatgggaaccttttttcgagcagactattgctatggcaagaaatgttcacaaatataagtacagaatgggagtagggtatagaccagatgaggatggt |
147 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| ||||||||||||||| |||||||||||| ||| ||||||| ||| |||||| || | | ||||| |
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| T |
33310618 |
atcatgggaaccttttgtagagcaaactatagctatggcaagaaatattcacaaatataggtatcgaatggggccaggatatagagaagctaaagatggg |
33310519 |
T |
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| Q |
148 |
acaattactgaaaattactgggagcaagtgaatgaggcagaagaaca |
194 |
Q |
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||||| || |||||||| ||||||||||||||||| ||||||||||| |
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| T |
33310518 |
acaataaccgaaaattattgggagcaagtgaatgaagcagaagaaca |
33310472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 33250539 - 33250495
Alignment:
| Q |
200 |
ctcaaaagccttatagaattgagctagttggtgtcgtctgtgatg |
244 |
Q |
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||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
33250539 |
ctcaaaagccttacagaattgagctagttggtgtggtttgtgatg |
33250495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 33270711 - 33270667
Alignment:
| Q |
200 |
ctcaaaagccttatagaattgagctagttggtgtcgtctgtgatg |
244 |
Q |
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||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
33270711 |
ctcaaaagccttacagaattgagctagttggtgtggtttgtgatg |
33270667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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