View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1259_high_8 (Length: 490)
Name: NF1259_high_8
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Complemental strand, 14459371 - 14458947
Alignment:
| Q |
11 |
cataggtgaagtacaatttttctactatgcaaaattctacaagtcagagaatcatataaggtggcatgcatataagaaagcaataaaagataatgaaggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14459371 |
cataggtgaagtacaatttttctactatgcaaaattctacaagtcagagaatcatataaggtggcatgcatataagaaagcaataaaagataatgaaggt |
14459272 |
T |
|
| Q |
111 |
aagggaaaacttatgtcagaaccaacacatcatcaacaaattttgcgtcatttactcaacaatgagtccgaggaatggtgcaataaaatattcgaggtat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14459271 |
aagggaaaacttatgtcagaaccaacacatcatcaacaaattttgcgtcatttactcaacaatgagtccgaggaatggtgcaataaaatattcgaggtaa |
14459172 |
T |
|
| Q |
211 |
ttactgcattgaattattcctaagtttatatatcctatttcatttcatcattacataaaatcataaacagtactaacacatcactcatagatgaatttga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14459171 |
ttactgcattgaattattcctaagtttatatatcctatttcatttcatcattacataaaatcataaacagtactaacacatcactcatagatgaatttga |
14459072 |
T |
|
| Q |
311 |
atcctctcccctgctacaatagtgtgac-ata-ttttcatgtaaaaaagtgttatca---cacatcaatattatgttctggttaaacacaatattgttgc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14459071 |
atcctctcccctgctacaatagtgtgacaatatttttcatgtgaaaaagtgttatcacttcacatcaatattatgttctggttaaacaaaatattgttgc |
14458972 |
T |
|
| Q |
406 |
attgttgcatgcagaggatccaaat |
430 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
14458971 |
atagttgcatgcagaggatccaaat |
14458947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 305 - 407
Target Start/End: Complemental strand, 14468059 - 14467954
Alignment:
| Q |
305 |
atttgaatcctctcccctgctacaatagtgtgaca---tattttcatgtaaaaaagtgttatcacacatcaatattatgttctggttaaacacaatattg |
401 |
Q |
| |
|
|||||||||||||||| || | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14468059 |
atttgaatcctctcccatggtgcaacagtgtgacaaaatattttcatgtaaaaaagtgttatcacacatcaatattatgttctggttaaacaaaatattg |
14467960 |
T |
|
| Q |
402 |
ttgcat |
407 |
Q |
| |
|
|||||| |
|
|
| T |
14467959 |
ttgcat |
14467954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 490
Target Start/End: Complemental strand, 14467837 - 14467784
Alignment:
| Q |
437 |
ctacagactctactgtcatttctccaacattatagattgaatccactgtgaaat |
490 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
14467837 |
ctacagactctacttttattgctccaacattatagattgaatcaactgtgaaat |
14467784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University