View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_10 (Length: 479)
Name: NF1259_low_10
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 65 - 468
Target Start/End: Original strand, 34904883 - 34905285
Alignment:
| Q |
65 |
ctggctgggatgaagcgccaaaaggtgtaaatatgctgcttccgaatactggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgagt |
164 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34904883 |
ctggctgggatgaagcgccaaaaggtgttaatatgctgcttccaaatactggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgggt |
34904982 |
T |
|
| Q |
165 |
ggcacttccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgaccaaacgctgatgatcctataaagtagaaaagttgg |
264 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34904983 |
ggcacttccaaatggacttgtttgagtaggattagagccaaaacctccaaaagcaggcttctgaccaaacgctgatgatcctataaagtagaaaagttgg |
34905082 |
T |
|
| Q |
265 |
ttctcagttagaattagaaaactgcaaaatctaataatataaaaacaataaaaaggcagataagtaagccaaaagatgccaatgattaccattattagat |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905083 |
ttctcagttagaattagaaaactgcaaaatctaataatataaaaacaataaaaaggcagataagtaagccaaaagatgccaatgattaccattattagat |
34905182 |
T |
|
| Q |
365 |
aatacaaatctcagttgtcatgtaatctttaggtcttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattcct |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905183 |
-atacaaatctcagttgtcatgtaatctttaggtcttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattcct |
34905281 |
T |
|
| Q |
465 |
tcat |
468 |
Q |
| |
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|||| |
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| T |
34905282 |
tcat |
34905285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 93 - 367
Target Start/End: Original strand, 34896187 - 34896461
Alignment:
| Q |
93 |
aaatatgctgcttccgaatactggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgagtggcacttccaaatggacttgtttgagta |
192 |
Q |
| |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34896187 |
aaatatgctgcttccaaatgctggttgcgactgttgggtgttacttccaaatgctggttgtgatggttgggtggcacttccaaatggacttgtttgagta |
34896286 |
T |
|
| Q |
193 |
ggagtagagccaaaacctccaaaagcaggcttctgaccaaacgctgatgatcctataaagtagaaaagttggttctcagttagaattagaaaactgcaaa |
292 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
34896287 |
ggagtagagccaaaacctccaaaagcaggcttctgaccaaacactgatgatcctataaaggagaaaagttggatctcagttagaattagaaaactgcaaa |
34896386 |
T |
|
| Q |
293 |
atctaataatataaaaacaataaaaaggcagataagtaagccaaaagatgccaatgattaccattattagataat |
367 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34896387 |
atctaataatataaaaacaataaaaaggcagaaaagtaagccaaaagatgctaatgattaccattattagataat |
34896461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 132 - 362
Target Start/End: Complemental strand, 28545778 - 28545552
Alignment:
| Q |
132 |
gttacttccaaatgctggttgtgatggttgagtggcacttccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgacca |
231 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
28545778 |
gttacttccaaatgctggtcgtgatggttggatggcacttctacatggacttgtttgagtaggagtagagccaaaacctacaaaagcaggctcctgacca |
28545679 |
T |
|
| Q |
232 |
aacgctgatgatcctataaagtagaaaagttggttctcagttagaattagaaaactgcaaaatctaataatataaaaacaataaaaaggcagataagtaa |
331 |
Q |
| |
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|| |||||||||| | | | ||| |||||| | || ||||||||||||||| |||||| ||||||| | || || ||||||||||| | |||| |
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| T |
28545678 |
aagagtgatgatcctgggagggaacaaacttggtt-taagatagaattagaaaactacaaaatataataat---acaataaaaaaaaggcagaaacgtaa |
28545583 |
T |
|
| Q |
332 |
gccaaaagatgccaatgattaccattattag |
362 |
Q |
| |
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|||||||||||| ||| ||||||||||||| |
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|
| T |
28545582 |
gccaaaagatgctaatatttaccattattag |
28545552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 364 - 462
Target Start/End: Original strand, 34896486 - 34896584
Alignment:
| Q |
364 |
taatacaaatctcagttgtcatgtaatctttaggtcttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattc |
462 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34896486 |
taatacaaatctcagttgttacgtaatctttaggtcttcaaaaagaaatgtaaactaaaattgaatagagaatgcatatagctgaaagaaatcacattc |
34896584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 171 - 365
Target Start/End: Original strand, 34910064 - 34910251
Alignment:
| Q |
171 |
tccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgaccaaacgctgatgatcctataaagtagaaaagttggttctca |
270 |
Q |
| |
|
|||||| |||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| |||||| ||| | | |||||||||||| |
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|
| T |
34910064 |
tccaaaaggacttatttgagtaggtgtatagccaaaacctccaaaagcaggcacctgaccaaagaatgacgatcctgggaaggaagagagttggttctca |
34910163 |
T |
|
| Q |
271 |
gttagaattagaaaactgcaaaatctaataatataaaaacaataaaa-aggcagataagtaagccaaaagatgccaatgattaccattattagata |
365 |
Q |
| |
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| |||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||| |
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| T |
34910164 |
gatagaattagaaaactgcaaaatataataa--------caataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagata |
34910251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 131 - 365
Target Start/End: Complemental strand, 28543544 - 28543315
Alignment:
| Q |
131 |
tgttacttccaaatgctggttgtgatggttgagtggcacttccaaatggacttgtttgagtaggagtagagccaaaacctccaaaagcaggcttctgacc |
230 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||| |||||| |||||| | |||||||| | ||||||||||||||||||| ||||| ||| | |
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| T |
28543544 |
tgttgcttccaaatactggttgtgatggttgtatggcacatccaaaaggacttatctgagtaggcatcgagccaaaacctccaaaagaaggctcctggca |
28543445 |
T |
|
| Q |
231 |
aaacgctgatgatcctataaagtagaaaagttggttctcagttagaattagaaaactgcaaaatctaataatataaaaacaat-aaaaaggcagataagt |
329 |
Q |
| |
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||| | |||||||||| ||| | | ||| |||| ||| |||||||||||||| ||||||| ||||||| |||||| ||||||| ||| || | |
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| T |
28543444 |
aaaggatgatgatcctgggaaggaagagagtcggttttcaaatagaattagaaaac-gcaaaatataataat-----aacaataaaaaagggagaaaact |
28543351 |
T |
|
| Q |
330 |
aagccaaaagatgccaatgattaccattattagata |
365 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
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|
| T |
28543350 |
aagccaaaagatgctaatgattaccattattagata |
28543315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 364 - 468
Target Start/End: Original strand, 34910281 - 34910385
Alignment:
| Q |
364 |
taatacaaatctcagttgtcatgtaatctttaggtcttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattcc |
463 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||| | |||||| |||||||| || || ||||||| ||||||| ||||||||||||||||||| |
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| T |
34910281 |
taatacaaatcttagtcgttatgtaatctttaggtctttacaaagaaccgtaaattagcatcgactagagaacacatataactgaaagaaatcacattcc |
34910380 |
T |
|
| Q |
464 |
ttcat |
468 |
Q |
| |
|
||||| |
|
|
| T |
34910381 |
ttcat |
34910385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 468
Target Start/End: Complemental strand, 28543232 - 28543203
Alignment:
| Q |
439 |
atatagctgaaagaaatcacattccttcat |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28543232 |
atatagctgaaagaaatcacattccttcat |
28543203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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