View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_13 (Length: 417)
Name: NF1259_low_13
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 51416860 - 51416473
Alignment:
| Q |
1 |
agtacgaatatccattgcaggtcaattatattggtcaaataatagcgtaccctacaacaactacagatatctgatcttgaataatatgattcacctgcga |
100 |
Q |
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| T |
51416860 |
agtacgaatatccattgcaggtcaattatattggtcaaataataacgtaccctacaacaactacagatatctgatcttgaataatatgattcacctgcta |
51416761 |
T |
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| Q |
101 |
catgcacatgatgtgctatctcactcaatcagcattaacaatgatgatgatccaaccatctctgtgaactcctctgccgcctggtcaacatgaaactctt |
200 |
Q |
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| T |
51416760 |
catgcacatgatgtgctatctcactcaatcagcattaacaatgatgatgatccaaccatctctgtgaactcctctgccgcctggtcaacatgaaagtctt |
51416661 |
T |
|
| Q |
201 |
tctgctcctccgccctctccctcgtcatctttacgcgcctccattcatttctggttccacgacataccctcatttaccgccggagataatagctttctcc |
300 |
Q |
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| T |
51416660 |
tctgctcctccgccctctccctcgtcatctttacgcgcctccattcatttctggttccacgacataccctcatttaccgccggagataatagctttctcc |
51416561 |
T |
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| Q |
301 |
tactgctgctggcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacgaaatacatat |
388 |
Q |
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| T |
51416560 |
tactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacgaaatacatat |
51416473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 388
Target Start/End: Complemental strand, 51418584 - 51418480
Alignment:
| Q |
280 |
ccggagataatagctttctcctactgctgctggcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacga |
379 |
Q |
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| T |
51418584 |
ccggagataatagcttcctcctactactgtttgcacca----cgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataa |
51418489 |
T |
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| Q |
380 |
aatacatat |
388 |
Q |
| |
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||||||||| |
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| T |
51418488 |
aatacatat |
51418480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 388
Target Start/End: Complemental strand, 51413535 - 51413427
Alignment:
| Q |
279 |
gccggagataatagctttctcctactgctgctggcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacg |
378 |
Q |
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|||||||| || ||||| |||||||| |||||||| ||| | |||| |||| | |||||| |||| ||||||||||||||||| ||||||||||||| | |
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| T |
51413535 |
gccggagacaaaagcttcctcctactactgctggcgccac-cgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatg |
51413437 |
T |
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| Q |
379 |
aaatacatat |
388 |
Q |
| |
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|||||||||| |
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| T |
51413436 |
aaatacatat |
51413427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 51413666 - 51413628
Alignment:
| Q |
165 |
tgaactcctctgccgcctggtcaacatgaaactctttct |
203 |
Q |
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||||||| || |||||||||||||||||||||||||||| |
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| T |
51413666 |
tgaactcttccgccgcctggtcaacatgaaactctttct |
51413628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 51418659 - 51418602
Alignment:
| Q |
222 |
tcgtcatctttacgcgcctccattcatttctggttccacgacataccctcatttaccg |
279 |
Q |
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| T |
51418659 |
tcgtcatcttcacgcgcctcccttcatttctggttccataatacaccctcatttgccg |
51418602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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