View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_14 (Length: 401)
Name: NF1259_low_14
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_14 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Original strand, 1762080 - 1762440
Alignment:
| Q |
11 |
cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762080 |
cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc |
1762179 |
T |
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| Q |
111 |
aaagcttagagaacttcaaaacatcatttgcaaaatttttgctggaattccaggctttaggtatgtttaatctttatcatattatgatacgaggttaatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762180 |
aaagcttagagaacttcaaaacatcatttgcaaaatttttgctggaattccaggctttaggtatgtttaatctttatcatattatgatacgaggttaatt |
1762279 |
T |
|
| Q |
211 |
tatttcatatataatattatgttctctactattattgttagtgatgatactaatgttgaaaatggaatcataatttggttttagatatttgccaaacaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762280 |
tatttcatatataatattatgttctctactattattgttagtgatgatactaatgttgaaaatggaatcataatttggttttagatatttgccaaacaaa |
1762379 |
T |
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| Q |
311 |
agcaatagacaaatgtggagattagagaaagagataagctcaaagatatcaaagctgataa |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1762380 |
agcaatagacaaatgtggagattagagaaagagataagttcaaagatatcaaagctgataa |
1762440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 25196654 - 25196765
Alignment:
| Q |
11 |
cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc |
110 |
Q |
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||||||||| |||||| |||| ||| ||| ||| || | |||||||||||| |||| |||||||||||||||||||||||||||| |||||| || | |
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| T |
25196654 |
cagagattacagttgatgaagatttgcgaagcttgtcggctgacataattgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatattcgc |
25196753 |
T |
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| Q |
111 |
aaagcttagaga |
122 |
Q |
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|||||||||||| |
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| T |
25196754 |
aaagcttagaga |
25196765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 25196942 - 25197050
Alignment:
| Q |
245 |
ttgttagtgatgatactaatgttgaaaatggaatcataatttggttttagatatttgccaaacaaaagcaatagacaaatgtggagattagagaaagaga |
344 |
Q |
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|||||||| ||| ||||||||| | |||||| |||||||| | ||| || || ||||||||||| || |||| |||||| |||||| | |||||||||| |
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| T |
25196942 |
ttgttagtaatggtactaatgtgggaaatggtatcataatcttattt-aggtacttgccaaacaagagaaatatacaaatatggagactggagaaagaga |
25197040 |
T |
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| Q |
345 |
taagctcaaa |
354 |
Q |
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||| |||||| |
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| T |
25197041 |
taaactcaaa |
25197050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 366
Target Start/End: Original strand, 19207340 - 19207460
Alignment:
| Q |
245 |
ttgttagtgatgatactaatgttgaaaatggaatcataatttggttttagatatttgccaaacaaaagcaatagacaaatgtggagattagagaaagaga |
344 |
Q |
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|||||| ||||||||||||||| |||||||| | ||| || || ||||||||| || |||||||||||||||||||| || ||||||||||||||||||| |
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| T |
19207340 |
ttgttaatgatgatactaatgtggaaaatggtaccatgatatg-ttttagatacttaccaaacaaaagcaatagacagatatggagattagagaaagaga |
19207438 |
T |
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| Q |
345 |
taagctcaaagatatcaaagct |
366 |
Q |
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||| |||||| ||||| ||||| |
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| T |
19207439 |
taaactcaaatatatccaagct |
19207460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 19207093 - 19207257
Alignment:
| Q |
11 |
cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc |
110 |
Q |
| |
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|||||||||||||||| |||| || ||| ||| |||| |||||||||||| |||| | ||||||||||||||||||| ||||||| |||||| || | |
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| T |
19207093 |
cagagattaaagttgatgaagatctgcgaagcttgtcagctgacataattgctagagttagttttgggagcaattatgtcgaaggaaaagaaatattcac |
19207192 |
T |
|
| Q |
111 |
aaagcttagagaacttcaaaacatcatttgcaaaatttttgctggaattccaggctttaggtatg |
175 |
Q |
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|||||||||||| ||| ||| || | | ||| || | || ||||||||| ||||||||||||| |
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| T |
19207193 |
aaagcttagagatcttataaaactcctctccaagatatatgttggaattccgggctttaggtatg |
19207257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 9688 - 9766
Alignment:
| Q |
288 |
gttttagatatttgccaaacaaaagcaatagacaaatgtggagattagagaaagagataagctcaaagatatcaaagct |
366 |
Q |
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|||||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||| | |||||| ||||||||||| |
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| T |
9688 |
gttttagatacttgccaaacaaaagcaatagacagatatggagattggaggaagagattaactcaaatatatcaaagct |
9766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 9419 - 9527
Alignment:
| Q |
11 |
cagagattaaagttgaccaagacttgagaaacttatcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttc |
110 |
Q |
| |
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||||||| ||| ||||| |||| || ||| ||| |||| |||||||||||| |||| ||||||||||||||||||||| |||||| |||||| || | |
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| T |
9419 |
cagagataaaaattgacgaagatctgcgaagcttgtcagctgacataattgctagagtttgttttgggagcaattatgtcaaaggaaaagaaatattcac |
9518 |
T |
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| Q |
111 |
aaagcttag |
119 |
Q |
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||||||||| |
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| T |
9519 |
aaagcttag |
9527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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