View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1259_low_15 (Length: 401)

Name: NF1259_low_15
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1259_low_15
NF1259_low_15
[»] chr5 (23 HSPs)
chr5 (317-389)||(6428059-6428131)
chr5 (124-194)||(7083395-7083465)
chr5 (124-194)||(22704402-22704472)
chr5 (124-190)||(6427871-6427937)
chr5 (318-383)||(1172079-1172144)
chr5 (318-382)||(6428087-6428151)
chr5 (316-389)||(7083156-7083229)
chr5 (318-383)||(7083189-7083254)
chr5 (336-389)||(7083210-7083263)
chr5 (124-175)||(3460859-3460910)
chr5 (124-175)||(41758204-41758255)
chr5 (124-175)||(6271360-6271411)
chr5 (124-176)||(1172388-1172440)
chr5 (124-175)||(39223498-39223549)
chr5 (137-175)||(1974865-1974903)
chr5 (339-381)||(3459648-3459690)
chr5 (316-364)||(7083154-7083202)
chr5 (335-383)||(1172106-1172154)
chr5 (145-176)||(22302407-22302438)
chr5 (138-167)||(3460936-3460965)
chr5 (318-354)||(3459648-3459684)
chr5 (316-352)||(40012469-40012505)
chr5 (124-175)||(40016637-40016686)
[»] chr2 (20 HSPs)
chr2 (316-379)||(8557011-8557074)
chr2 (124-194)||(2154692-2154762)
chr2 (124-194)||(8556823-8556893)
chr2 (320-381)||(24936638-24936699)
chr2 (320-381)||(25685294-25685355)
chr2 (318-381)||(32736943-32737006)
chr2 (124-175)||(29132117-29132168)
chr2 (318-383)||(32736968-32737033)
chr2 (124-175)||(42121284-42121335)
chr2 (333-379)||(22494130-22494176)
chr2 (131-173)||(22495383-22495425)
chr2 (333-379)||(42120871-42120917)
chr2 (332-379)||(29131838-29131885)
chr2 (345-389)||(8557013-8557057)
chr2 (318-354)||(24936638-24936674)
chr2 (318-354)||(25685294-25685330)
chr2 (30-82)||(35378177-35378226)
chr2 (318-352)||(42120871-42120905)
chr2 (124-175)||(12967961-12968010)
chr2 (339-383)||(32736995-32737039)
[»] chr4 (34 HSPs)
chr4 (124-194)||(49064991-49065061)
chr4 (128-194)||(21712575-21712641)
chr4 (316-379)||(21712384-21712447)
chr4 (317-388)||(31823935-31824006)
chr4 (318-381)||(31823963-31824026)
chr4 (124-194)||(27760562-27760629)
chr4 (124-175)||(14329574-14329625)
chr4 (318-381)||(38132391-38132454)
chr4 (318-387)||(36172582-36172651)
chr4 (318-379)||(46815826-46815887)
chr4 (124-175)||(886472-886523)
chr4 (125-175)||(38132039-38132089)
chr4 (318-383)||(27760221-27760286)
chr4 (124-176)||(1227389-1227441)
chr4 (318-382)||(14329892-14329956)
chr4 (318-382)||(36172560-36172624)
chr4 (124-168)||(46814603-46814647)
chr4 (335-383)||(46815816-46815864)
chr4 (318-381)||(27760196-27760259)
chr4 (137-175)||(31823546-31823584)
chr4 (137-175)||(32936287-32936325)
chr4 (333-383)||(32937074-32937124)
chr4 (323-389)||(36172607-36172673)
chr4 (318-383)||(38132364-38132429)
chr4 (316-365)||(49064820-49064869)
chr4 (333-379)||(885661-885707)
chr4 (145-176)||(14989778-14989809)
chr4 (145-176)||(46567849-46567880)
chr4 (318-352)||(885661-885695)
chr4 (318-356)||(32937086-32937124)
chr4 (345-383)||(49064829-49064867)
chr4 (124-175)||(28797368-28797417)
chr4 (124-175)||(33162381-33162430)
chr4 (316-352)||(46815851-46815887)
[»] chr1 (34 HSPs)
chr1 (124-194)||(39223290-39223360)
chr1 (316-379)||(39223487-39223550)
chr1 (124-194)||(30308938-30309008)
chr1 (124-194)||(46924364-46924434)
chr1 (316-379)||(30309136-30309199)
chr1 (318-381)||(48567680-48567743)
chr1 (318-383)||(21483967-21484032)
chr1 (318-389)||(21483913-21483984)
chr1 (124-175)||(41872302-41872353)
chr1 (318-381)||(41874178-41874241)
chr1 (124-175)||(46179235-46179286)
chr1 (318-376)||(50067549-50067607)
chr1 (318-382)||(21483940-21484004)
chr1 (318-378)||(46179578-46179638)
chr1 (124-175)||(3659620-3659671)
chr1 (124-175)||(48567353-48567404)
chr1 (316-379)||(46924562-46924625)
chr1 (332-383)||(47487351-47487402)
chr1 (333-379)||(17697646-17697692)
chr1 (137-175)||(49597785-49597823)
chr1 (333-387)||(50067537-50067591)
chr1 (318-379)||(47487364-47487425)
chr1 (333-383)||(21483901-21483951)
chr1 (337-381)||(18171120-18171164)
chr1 (132-176)||(18171409-18171453)
chr1 (318-352)||(17697646-17697680)
chr1 (145-175)||(21483516-21483546)
chr1 (345-387)||(30309138-30309180)
chr1 (345-387)||(39223489-39223531)
chr1 (339-389)||(46179572-46179622)
chr1 (145-175)||(49594621-49594651)
chr1 (343-381)||(49598183-49598221)
chr1 (318-354)||(18171120-18171156)
chr1 (124-175)||(39650927-39650976)
[»] chr8 (10 HSPs)
chr8 (124-194)||(40416311-40416381)
chr8 (316-379)||(40416120-40416183)
chr8 (318-381)||(28705430-28705493)
chr8 (332-379)||(33775940-33775987)
chr8 (137-175)||(4640400-4640438)
chr8 (137-175)||(28704590-28704628)
chr8 (333-378)||(43637048-43637093)
chr8 (333-381)||(28705418-28705466)
chr8 (318-379)||(43637060-43637120)
chr8 (316-352)||(33775951-33775987)
[»] chr3 (26 HSPs)
chr3 (316-381)||(39416219-39416284)
chr3 (124-175)||(42385088-42385139)
chr3 (331-381)||(25575878-25575928)
chr3 (317-390)||(36720584-36720657)
chr3 (124-175)||(25575423-25575474)
chr3 (318-389)||(25575838-25575909)
chr3 (317-379)||(42383919-42383981)
chr3 (318-379)||(42949531-42949592)
chr3 (318-383)||(44834750-44834815)
chr3 (124-176)||(36720173-36720225)
chr3 (318-389)||(39416194-39416265)
chr3 (124-175)||(42994271-42994322)
chr3 (336-382)||(42949522-42949568)
chr3 (333-379)||(47066554-47066600)
chr3 (333-379)||(53826325-53826371)
chr3 (318-379)||(44834777-44834838)
chr3 (143-175)||(39415835-39415867)
chr3 (124-175)||(44834168-44834217)
chr3 (145-176)||(25744540-25744571)
chr3 (336-383)||(42383942-42383989)
chr3 (145-176)||(47559852-47559883)
chr3 (333-382)||(44834738-44834787)
chr3 (318-354)||(25575892-25575928)
chr3 (318-382)||(33448699-33448762)
chr3 (124-175)||(35485990-35486039)
chr3 (316-352)||(44834802-44834838)
[»] chr7 (21 HSPs)
chr7 (316-389)||(18238455-18238528)
chr7 (318-381)||(41218483-41218546)
chr7 (30-97)||(48846181-48846245)
chr7 (124-175)||(1536521-1536572)
chr7 (318-369)||(18238448-18238499)
chr7 (320-383)||(18238488-18238551)
chr7 (318-389)||(41218502-41218573)
chr7 (333-379)||(26500498-26500544)
chr7 (333-379)||(26592169-26592215)
chr7 (130-175)||(34353858-34353903)
chr7 (124-175)||(18238880-18238931)
chr7 (334-383)||(2356949-2356998)
chr7 (134-175)||(21154342-21154383)
chr7 (318-380)||(2356925-2356987)
chr7 (333-379)||(20378336-20378382)
chr7 (145-175)||(41218849-41218879)
chr7 (332-365)||(34353512-34353545)
chr7 (360-389)||(34353515-34353544)
chr7 (316-352)||(20378346-20378382)
chr7 (124-175)||(38791589-38791638)
chr7 (124-175)||(48218897-48218946)
[»] chr6 (14 HSPs)
chr6 (318-382)||(35055351-35055415)
chr6 (318-381)||(320191-320254)
chr6 (30-97)||(7016273-7016337)
chr6 (322-389)||(35055328-35055395)
chr6 (130-175)||(319820-319865)
chr6 (124-176)||(24174154-24174206)
chr6 (124-175)||(14154111-14154162)
chr6 (318-379)||(35055378-35055439)
chr6 (318-389)||(320165-320235)
chr6 (137-175)||(802354-802392)
chr6 (137-175)||(11718250-11718288)
chr6 (341-379)||(35058043-35058081)
chr6 (318-352)||(35058047-35058081)
chr6 (124-175)||(35054050-35054099)
[»] scaffold0861 (2 HSPs)
scaffold0861 (124-175)||(3152-3203)
scaffold0861 (333-379)||(2896-2942)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 6428059 - 6428131
Alignment:
Q  317 aaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6428059 aaataaaaattgtgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 6428131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 7083465 - 7083395
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  7083465 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattgttatatgcatca 7083395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 22704472 - 22704402
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  22704472 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattgttatatgcatca 22704402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 6427871 - 6427937
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6427871 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattgttatatgc 6427937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 1172144 - 1172079
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  1172144 aataaaaattgcgatagtgtgaattcgaataaaaattgcgacaacgtgaattcaaataaaaattgc 1172079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 6428087 - 6428151
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattg 382  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6428087 aataaaaattgcaacagcgtgaattcaaataaaaattgcaacagcgtgaattcaaataaaaattg 6428151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 7083229 - 7083156
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||||||||||||||| ||||||||||| |||||||||||| |  ||||||||||||||||||||||| |||||    
T  7083229 caaataaaaattgcgacagcgtgaattcaaataaaaattgcgattgcgtgaattcaaataaaaattgcgacagc 7083156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 7083254 - 7083189
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  7083254 aataaaaattgcaacagcgtgaattcaaataaaaattgcgacagcgtgaattcaaataaaaattgc 7083189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 7083263 - 7083210
Alignment:
Q  336 gtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7083263 gtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcgacagc 7083210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 3460910 - 3460859
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3460910 aaattattgtatcaattattgtattgtatgaattctattaataaaatgagat 3460859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 41758255 - 41758204
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41758255 aaattattgtatcaattattgtattgtatgaattctattaataaaatgagat 41758204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 6271360 - 6271411
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  6271360 aaattattgtatcaataattgtattgtatgaattctattaataaaatgagat 6271411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 1172440 - 1172388
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatg 176  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  1172440 aaattattgtatcagttattgtattgtatgaattctattaataaaataagatg 1172388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 39223498 - 39223549
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||||||||    
T  39223498 aaattattgtatcaattattctgttgtatgaattctattaataaaatgagat 39223549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 1974865 - 1974903
Alignment:
Q  137 aattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1974865 aattattgtattgtatgaattctattaataaaatgagat 1974903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 3459690 - 3459648
Alignment:
Q  339 aattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  3459690 aattcgaataaaaattgcgacagcgtgaattcaaataaaaatt 3459648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 7083202 - 7083154
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgt 364  Q
    ||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  7083202 caaataaaaattgcgattgcgtgaattcaaataaaaattgcgacagcgt 7083154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 1172154 - 1172106
Alignment:
Q  335 cgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||||||||||||||||| | || |||||||| ||||||||||||    
T  1172154 cgtgaattcgaataaaaattgcgatagtgtgaattcgaataaaaattgc 1172106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 176
Target Start/End: Complemental strand, 22302438 - 22302407
Alignment:
Q  145 tattgtatgaattctattaataaaatgagatg 176  Q
    ||||||||||||||||||||||||||||||||    
T  22302438 tattgtatgaattctattaataaaatgagatg 22302407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 3460965 - 3460936
Alignment:
Q  138 attattgtattgtatgaattctattaataa 167  Q
    ||||||||||||||||||||||||||||||    
T  3460965 attattgtattgtatgaattctattaataa 3460936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 3459684 - 3459648
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaatt 354  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  3459684 aataaaaattgcgacagcgtgaattcaaataaaaatt 3459648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 40012505 - 40012469
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaa 352  Q
    |||||||||||||||| || |||||||||||||||||    
T  40012505 caaataaaaattgcgacagtgtgaattcgaataaaaa 40012469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 40016686 - 40016637
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||  ||||||||||||||||||||  |||||||||||||||||    
T  40016686 aaattattgtaagaattattgtattgtatgaat--tattaataaaatgagat 40016637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 8557011 - 8557074
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8557011 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 8557074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 2154762 - 2154692
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  2154762 aaattgttgtatcaattattgtattgtttgaattctattaataaaatgagatgatattgttatatgcatca 2154692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 8556823 - 8556893
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  8556823 aaattgttttatcaattattgtattgtatgaattctattaataaaatgagatgatattgttatatgcatca 8556893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 24936699 - 24936638
Alignment:
Q  320 taaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  24936699 taaaaattgcgatagcgtgaattcgaataaaaattgcgatagcgtgaattcaaataaaaatt 24936638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 25685355 - 25685294
Alignment:
Q  320 taaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  25685355 taaaaattgcgatagcgtgaattcgaataaaaattgcgatagcgtgaattcaaataaaaatt 25685294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 32737006 - 32736943
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  32737006 aataaatattgcgatagcgtgaattcgaataaaaattgcgacaacgtgaattcaaataaaaatt 32736943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 29132168 - 29132117
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29132168 aaattattgtatcaattattgtattgtatgaattctattaataaaatgagat 29132117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 32737033 - 32736968
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||||||||| |||||||||||||||||| ||||| | ||||||||||| ||||||||||||    
T  32737033 aataaaaattgcgaaagcgtgaattcgaataaatattgcgatagcgtgaattcgaataaaaattgc 32736968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 42121335 - 42121284
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  42121335 aaattattgtatcaattattgtattgaatgaattctattaataaaatgagat 42121284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 22494176 - 22494130
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  22494176 agcgtgaattcgaataaaaattgcgacagcgtgaattcaaataaaaa 22494130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 22495425 - 22495383
Alignment:
Q  131 tgtatcaattattgtattgtatgaattctattaataaaatgag 173  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  22495425 tgtatcaattattatattgtatgaattctattaataaaatgag 22495383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 42120917 - 42120871
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  42120917 agcgtgaattcgaataaaaattgcgacagcgtgaattcgaataaaaa 42120871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 29131885 - 29131838
Alignment:
Q  332 tagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||||    
T  29131885 tagcgtgaattcgaataaaaattgcgacagcgtgaattcggataaaaa 29131838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 8557013 - 8557057
Alignment:
Q  345 aataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||    
T  8557013 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagc 8557057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 24936674 - 24936638
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaatt 354  Q
    |||||||||||||||||||||||||| ||||||||||    
T  24936674 aataaaaattgcgatagcgtgaattcaaataaaaatt 24936638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 25685330 - 25685294
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaatt 354  Q
    |||||||||||||||||||||||||| ||||||||||    
T  25685330 aataaaaattgcgatagcgtgaattcaaataaaaatt 25685294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 35378177 - 35378226
Alignment:
Q  30 gcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgca 82  Q
    ||||||||||||| ||||||||   ||||||||||| ||||||||||||||||    
T  35378177 gcctcttagtgttcaatgaagt---gctgctagaggcagctttgtttgtcgca 35378226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 42120905 - 42120871
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaa 352  Q
    |||||||||||||| ||||||||||||||||||||    
T  42120905 aataaaaattgcgacagcgtgaattcgaataaaaa 42120871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 12967961 - 12968010
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||  ||||||||||||||||||||  |||||||||||||||||    
T  12967961 aaattattgtaagaattattgtattgtatgaat--tattaataaaatgagat 12968010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 32737039 - 32736995
Alignment:
Q  339 aattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||||||||||||| | ||||||||||| |||||| |||||    
T  32737039 aattcgaataaaaattgcgaaagcgtgaattcgaataaatattgc 32736995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 49065061 - 49064991
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  49065061 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattgttatatgcatca 49064991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 21712641 - 21712575
Alignment:
Q  128 tgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  21712641 tgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattgttatatgcatca 21712575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 21712447 - 21712384
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21712447 caaataaaaatcgcgatagcgtgaattcgaataaaaattgcaacggcgtgaattcaaataaaaa 21712384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 31823935 - 31824006
Alignment:
Q  317 aaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacag 388  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| ||||    
T  31823935 aaataaaaattgcgatagcgtgaattcgaataaatattgcgatagcgtgaattcgaataaaaattgcgacag 31824006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 31823963 - 31824026
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  31823963 aataaatattgcgatagcgtgaattcgaataaaaattgcgacagtgtgaattcaaataaaaatt 31824026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 27760629 - 27760562
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||    
T  27760629 aaattattgtatcaattattgtattgtatgaattctattaataaaatga---gatattattatatgcatca 27760562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 14329574 - 14329625
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14329574 aaattattgtatcaattattgtattgtatgaattctattaataaaatgagat 14329625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 38132391 - 38132454
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  38132391 aataaatattgtgatagcgtgaattcgaataaaaattgcgacaacgtgaattcaaataaaaatt 38132454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 36172651 - 36172582
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaaca 387  Q
    |||||||||||||| | | |||||||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  36172651 aataaaaattgcgacaacatgaattcgaataaaaaatgcgacagcgtgaattcgaataaaaattgcaaca 36172582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 46815826 - 46815887
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||    
T  46815826 aataaaaattgcgacagcgtgaattcaaataaaaattgcgagagcgtgaattcaaataaaaa 46815887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 886523 - 886472
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  886523 aaattattgtatcaattattgtattgtatgaattctattaataaaaggagat 886472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 38132039 - 38132089
Alignment:
Q  125 aattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  38132039 aattattgtatcaattattgtattgtataaattctattaataaaatgagat 38132089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 27760286 - 27760221
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    ||||||||||| ||||||||||||||||||||| ||||| | ||||||||||| ||| ||||||||    
T  27760286 aataaaaattgtgatagcgtgaattcgaataaatattgcgatagcgtgaattcgaattaaaattgc 27760221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 1227441 - 1227389
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatg 176  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||| |||||    
T  1227441 aaattattgtatcaattattgtattgtacgaattctattaataaaataagatg 1227389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 14329892 - 14329956
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattg 382  Q
    |||||| |||||||||||||||||| |||| |||||| | ||||||||||||| |||||||||||    
T  14329892 aataaacattgcgatagcgtgaattagaatgaaaattacgacagcgtgaattcgaataaaaattg 14329956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 36172624 - 36172560
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattg 382  Q
    |||||||| ||||| |||||||||||||||||||||||||||| | ||||||  |||||||||||    
T  36172624 aataaaaaatgcgacagcgtgaattcgaataaaaattgcaacaacatgaatttgaataaaaattg 36172560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 46814603 - 46814647
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaa 168  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  46814603 aaattattgtatcaattattgtattgtatgaattctattaataaa 46814647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 46815816 - 46815864
Alignment:
Q  335 cgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  46815816 cgtgcattcgaataaaaattgcgacagcgtgaattcaaataaaaattgc 46815864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 27760259 - 27760196
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||| ||||||||||||||||||||||| |||||||| |||  |||||||| ||||||||||    
T  27760259 aataaatattgcgatagcgtgaattcgaattaaaattgcgacaatgtgaattccaataaaaatt 27760196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 31823546 - 31823584
Alignment:
Q  137 aattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31823546 aattattgtattgtatgaattctattaataaaatgagat 31823584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 32936287 - 32936325
Alignment:
Q  137 aattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32936287 aattattgtattgtatgaattctattaataaaatgagat 32936325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 32937074 - 32937124
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  32937074 agcgtgaattcgaataaaaattgcgacagtgtgaattcgaataaaaattgc 32937124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 36172673 - 36172607
Alignment:
Q  323 aaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||||||||||||||||||| ||||||||||||| ||| | ||||||| |||||||| ||| |||||    
T  36172673 aaattgcgatagcgtgaatttgaataaaaattgcgacaacatgaattcgaataaaaaatgcgacagc 36172607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 38132364 - 38132429
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    ||||||||||  ||||||||||||||||||||| ||||  | ||||||||||| ||||||||||||    
T  38132364 aataaaaattatgatagcgtgaattcgaataaatattgtgatagcgtgaattcgaataaaaattgc 38132429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 49064869 - 49064820
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtg 365  Q
    |||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  49064869 caaataaaaattgcgatagcgtgaattcaaataaaaattgcgacaacgtg 49064820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 885707 - 885661
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  885707 agcgcgaattcgaataaaaattgcgacagcgtgaattcgaataaaaa 885661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 176
Target Start/End: Complemental strand, 14989809 - 14989778
Alignment:
Q  145 tattgtatgaattctattaataaaatgagatg 176  Q
    ||||||||||||||||||||||||||||||||    
T  14989809 tattgtatgaattctattaataaaatgagatg 14989778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 46567849 - 46567880
Alignment:
Q  145 tattgtatgaattctattaataaaatgagatg 176  Q
    ||||||||||||||||||||||||||||||||    
T  46567849 tattgtatgaattctattaataaaatgagatg 46567880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 885695 - 885661
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaa 352  Q
    |||||||||||||| ||||||||||||||||||||    
T  885695 aataaaaattgcgacagcgtgaattcgaataaaaa 885661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 32937086 - 32937124
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgc 356  Q
    |||||||||||||| || |||||||||||||||||||||    
T  32937086 aataaaaattgcgacagtgtgaattcgaataaaaattgc 32937124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 49064867 - 49064829
Alignment:
Q  345 aataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  49064867 aataaaaattgcgatagcgtgaattcaaataaaaattgc 49064829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 28797368 - 28797417
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||  ||||||||||||||||||||  |||||||||||||||||    
T  28797368 aaattattgtaagaattattgtattgtatgaat--tattaataaaatgagat 28797417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 33162381 - 33162430
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||  ||||||||||||||||||||  |||||||||||||||||    
T  33162381 aaattattgtaagaattattgtattgtatgaat--tattaataaaatgagat 33162430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 46815851 - 46815887
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaa 352  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  46815851 caaataaaaattgcgagagcgtgaattcaaataaaaa 46815887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 39223290 - 39223360
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  39223290 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattgttatatgcatca 39223360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 39223487 - 39223550
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39223487 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacaacgtgaattcaaataaaaa 39223550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 30308938 - 30309008
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  30308938 aaattgttgtatcaattattatattgtatgaattctattaataaaatgagatgatattgttacatgcatca 30309008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 46924364 - 46924434
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  46924364 aaattattgtatcaattattgtattgtatgaattctattaataaaatgagatgatattgttatatgcatca 46924434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 30309136 - 30309199
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  30309136 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacaacgtgaattcagataaaaa 30309199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 48567680 - 48567743
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  48567680 aataaatattgcgatagcatgaattcgaataaaaattgcgacagcgtgaattcaaataaaaatt 48567743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 21483967 - 21484032
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  21483967 aataaaaattgcgacagcgtgaattcgaacaaaaattgtgacagcgtgaattcaaataaaaattgc 21484032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 21483913 - 21483984
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||||||||| ||| |||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||    
T  21483913 aataaaaattacgacagcgtgaattcgaataaaaattgcgacaccgtgaattcgaataaaaattgcgacagc 21483984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 41872302 - 41872353
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41872302 aaattattgtatcaattattgtattgtatgaattctattaataaaatgagat 41872353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 41874178 - 41874241
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    ||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  41874178 aataaaaattgcgatagcgtgaattcgaaaaaaaattacgacagcgtgaattcgaataaaaatt 41874241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 46179235 - 46179286
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46179235 aaattattgtatcaattattgtattgtatgaattctattaataaaatgagat 46179286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 50067549 - 50067607
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataa 376  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  50067549 aataaaaattgcgatagcgtgtattcgaataaaaattgcaacaacgtgaattcgaataa 50067607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 21483940 - 21484004
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattg 382  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||||||||| || ||||||||    
T  21483940 aataaaaattgcgacaccgtgaattcgaataaaaattgcgacagcgtgaattcgaacaaaaattg 21484004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 46179578 - 46179638
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaa 378  Q
    ||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  46179578 aataaaaattgtgatagcgtgaattcaaataaatattgcgacagcgtgaattcaaataaaa 46179638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 3659671 - 3659620
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  3659671 aaattattgtatcaattattgtattgtatgaattctattaataaaataagat 3659620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 48567353 - 48567404
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  48567353 aaattattgtatcaattattatattgtatgaattctattaataaaatgagat 48567404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 46924562 - 46924625
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||||| ||||||||||||| || |||||||||||||  |||||||| |||||||||    
T  46924562 caaataaaaattgtgatagcgtgaatttgagtaaaaattgcaacgacgtgaattgaaataaaaa 46924625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 383
Target Start/End: Original strand, 47487351 - 47487402
Alignment:
Q  332 tagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  47487351 tagcgtgaattcgaataaaaattgggacagcgtgaattcgaataaaaattgc 47487402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 17697692 - 17697646
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  17697692 agcgtgaattcgaataaaaattgcgacagcgtgaattcgaataaaaa 17697646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 49597785 - 49597823
Alignment:
Q  137 aattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49597785 aattattgtattgtatgaattctattaataaaatgagat 49597823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 50067537 - 50067591
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaaca 387  Q
    |||||||||||||||||||||||| | |||||| |||| ||||||||||||||||    
T  50067537 agcgtgaattcgaataaaaattgcgatagcgtgtattcgaataaaaattgcaaca 50067591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 47487364 - 47487425
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||| || |||||||||||||||||||||||| || |||||||||  ||||||||    
T  47487364 aataaaaattgggacagcgtgaattcgaataaaaattgcgacggcgtgaatttgaataaaaa 47487425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 21483901 - 21483951
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||||| ||||||||||| | ||||||||||||| ||||||||||||    
T  21483901 agcgtgaatttgaataaaaattacgacagcgtgaattcgaataaaaattgc 21483951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 18171164 - 18171120
Alignment:
Q  337 tgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||    
T  18171164 tgaattagaataaaaattgcgagagcgtgaattcaaataaaaatt 18171120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 18171453 - 18171409
Alignment:
Q  132 gtatcaattattgtattgtatgaattctattaataaaatgagatg 176  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||    
T  18171453 gtatcaattattgaattgtatgaattctgttaataaaataagatg 18171409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 17697680 - 17697646
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaa 352  Q
    |||||||||||||| ||||||||||||||||||||    
T  17697680 aataaaaattgcgacagcgtgaattcgaataaaaa 17697646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 175
Target Start/End: Original strand, 21483516 - 21483546
Alignment:
Q  145 tattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||    
T  21483516 tattgtatgaattctattaataaaatgagat 21483546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 30309138 - 30309180
Alignment:
Q  345 aataaaaattgcaacagcgtgaattcaaataaaaattgcaaca 387  Q
    |||||||||||| | ||||||||||| ||||||||||||||||    
T  30309138 aataaaaattgcgatagcgtgaattcgaataaaaattgcaaca 30309180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 39223489 - 39223531
Alignment:
Q  345 aataaaaattgcaacagcgtgaattcaaataaaaattgcaaca 387  Q
    |||||||||||| | ||||||||||| ||||||||||||||||    
T  39223489 aataaaaattgcgatagcgtgaattcgaataaaaattgcaaca 39223531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 46179572 - 46179622
Alignment:
Q  339 aattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||||||||||||||||  | |||||||||||||||||| ||||| |||||    
T  46179572 aattcgaataaaaattgtgatagcgtgaattcaaataaatattgcgacagc 46179622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 175
Target Start/End: Original strand, 49594621 - 49594651
Alignment:
Q  145 tattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||    
T  49594621 tattgtatgaattctattaataaaatgagat 49594651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 49598183 - 49598221
Alignment:
Q  343 cgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  49598183 cgaataaatattgcgacagcgtgaattcaaataaaaatt 49598221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 18171156 - 18171120
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaatt 354  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  18171156 aataaaaattgcgagagcgtgaattcaaataaaaatt 18171120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 39650927 - 39650976
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||  ||||||||||||||||||||  |||||||||||||||||    
T  39650927 aaattattgtaagaattattgtattgtatgaat--tattaataaaatgagat 39650976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 40416381 - 40416311
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattattagatgcatca 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  40416381 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatgatattgttatattcatca 40416311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 40416183 - 40416120
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  40416183 caaataaaagttgtgatcgcgtgaattcgaataaaaattgcaacaacgtgaattcaaataaaaa 40416120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 28705430 - 28705493
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    ||||||||||| || | |||||||||||||||||||| | ||||||||||||| ||||||||||    
T  28705430 aataaaaattgggacaacgtgaattcgaataaaaatttcgacagcgtgaattcgaataaaaatt 28705493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 33775940 - 33775987
Alignment:
Q  332 tagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  33775940 tagcgtgaattcaaataaaaattgcgacagcgtgaattcaaataaaaa 33775987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 4640400 - 4640438
Alignment:
Q  137 aattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4640400 aattattgtattgtatgaattctattaataaaatgagat 4640438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 28704590 - 28704628
Alignment:
Q  137 aattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28704590 aattattgtattgtatgaattctattaataaaatgagat 28704628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 43637048 - 43637093
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaa 378  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||    
T  43637048 agcgtgaattcgaataaaaattgtgacagcgtgaattcgaataaaa 43637093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 28705418 - 28705466
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||||||||||||||||||||  ||| ||||||||| ||||||||||    
T  28705418 agcgtgaattcgaataaaaattgggacaacgtgaattcgaataaaaatt 28705466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 43637060 - 43637120
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||| || ||||||||||||||| |||||||  ||| ||||||||| ||||||||    
T  43637060 aataaaaattgtgacagcgtgaattcgaat-aaaattgtgacaacgtgaattcgaataaaaa 43637120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 33775951 - 33775987
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaa 352  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  33775951 caaataaaaattgcgacagcgtgaattcaaataaaaa 33775987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 381
Target Start/End: Original strand, 39416219 - 39416284
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39416219 caaataaatattgcgatagcgtgaattcgaataaaaattgcgacagcgtgaattcaaataaaaatt 39416284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 42385139 - 42385088
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42385139 aaattattgtatcaattattgtattgtatgaattctattaataaaatgagat 42385088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 25575878 - 25575928
Alignment:
Q  331 atagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25575878 atagcgtgaattcgaataaaaattgcgacagcgtgaattcaaataaaaatt 25575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 36720584 - 36720657
Alignment:
Q  317 aaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagct 390  Q
    ||||| ||||||||| ||||||||||||||||||||||||  || |||| ||||||||||||||||| ||||||    
T  36720584 aaatagaaattgcgacagcgtgaattcgaataaaaattgcgccatcgtggattcaaataaaaattgcgacagct 36720657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 25575423 - 25575474
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  25575423 aaattattgtatcaattattgtattgtatgagttctattaataaaatgagat 25575474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 25575838 - 25575909
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||||||||||||||||||||||||||||||||  |||  | ||||||||||| |||||||||||| |||||    
T  25575838 aataaaaattgcgatagcgtgaattcgaataaattttgtcatagcgtgaattcgaataaaaattgcgacagc 25575909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 42383981 - 42383919
Alignment:
Q  317 aaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||||||| |||||||||||||||||||||||| ||| | ||||||| ||||||||    
T  42383981 aaataaaaattgcgacagcgtgaattcgaataaaaattgcgacaacatgaattcgaataaaaa 42383919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 42949531 - 42949592
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||| |||||||||||||||||||||||  ||| ||||||||| ||||||||    
T  42949531 aataaaaattgcgacagcgtgaattcgaataaaaattgtgacaacgtgaattcgaataaaaa 42949592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 44834750 - 44834815
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    ||||||||||| || | |||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  44834750 aataaaaattgagacatcgtgaattcgaataaaaattgtgacaacgtgaattcaaataaaaattgc 44834815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 36720173 - 36720225
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatg 176  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  36720173 aaattattgtatcaattattctattgtatgaattctattaataaaataagatg 36720225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 39416194 - 39416265
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    ||||||||||  |||||||||||||| |||||| ||||| | ||||||||||| |||||||||||| |||||    
T  39416194 aataaaaattatgatagcgtgaattcaaataaatattgcgatagcgtgaattcgaataaaaattgcgacagc 39416265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 42994271 - 42994322
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  42994271 aaattattgtatcaaatattgtattgtatgaattctattaataaaataagat 42994322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 42949522 - 42949568
Alignment:
Q  336 gtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattg 382  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  42949522 gtgaattcgaataaaaattgcgacagcgtgaattcgaataaaaattg 42949568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 47066600 - 47066554
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||    
T  47066600 agcgtgaattcgaataaaaattgtgacagcgtgaattcgaataaaaa 47066554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 53826325 - 53826371
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  53826325 agcgtgaattcgaataaaaattgcgacaacgtgaattcgaataaaaa 53826371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 44834777 - 44834838
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||| || | ||||||||| |||||||||||| ||| ||||||||| ||||||||    
T  44834777 aataaaaattgtgacaacgtgaattcaaataaaaattgcgacatcgtgaattcgaataaaaa 44834838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 39415835 - 39415867
Alignment:
Q  143 tgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||||    
T  39415835 tgtattgtatgaattctattaataaaatgagat 39415867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 44834168 - 44834217
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||  ||||||||||||||||||||  |||||||||||||||||    
T  44834168 aaattgttgtaagaattattgtattgtatgaat--tattaataaaatgagat 44834217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 176
Target Start/End: Complemental strand, 25744571 - 25744540
Alignment:
Q  145 tattgtatgaattctattaataaaatgagatg 176  Q
    ||||||||||||||||||||||||||||||||    
T  25744571 tattgtatgaattctattaataaaatgagatg 25744540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 42383989 - 42383942
Alignment:
Q  336 gtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||  |||||||||||| ||||||||||||| ||||||||||||    
T  42383989 gtgaatttaaataaaaattgcgacagcgtgaattcgaataaaaattgc 42383942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 176
Target Start/End: Complemental strand, 47559883 - 47559852
Alignment:
Q  145 tattgtatgaattctattaataaaatgagatg 176  Q
    ||||||||||||||||||||||||||||||||    
T  47559883 tattgtatgaattctattaataaaatgagatg 47559852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 44834738 - 44834787
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattg 382  Q
    |||||||||| ||||||||||||  ||| ||||||||| |||||||||||    
T  44834738 agcgtgaatttgaataaaaattgagacatcgtgaattcgaataaaaattg 44834787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 25575892 - 25575928
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaatt 354  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  25575892 aataaaaattgcgacagcgtgaattcaaataaaaatt 25575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 33448699 - 33448762
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattg 382  Q
    |||||||||||||| ||| | |||| ||||||||| ||| || |||||||||| |||||||||||    
T  33448699 aataaaaattgcgacagcatcaatttgaataaaaa-tgcgaccgcgtgaattcgaataaaaattg 33448762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 35485990 - 35486039
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||  ||||||||||||||||||||  |||||||||||||||||    
T  35485990 aaattattgtaagaattattgtattgtatgaat--tattaataaaatgagat 35486039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 44834802 - 44834838
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaa 352  Q
    |||||||||||||||| | ||||||||||||||||||    
T  44834802 caaataaaaattgcgacatcgtgaattcgaataaaaa 44834838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 18238528 - 18238455
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |||||    
T  18238528 caaataaaaattgcgatagcgtgaattcgaataaatattgcgatagcgtgaattcgaataaaaattgcgacagc 18238455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 41218546 - 41218483
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  41218546 aataaatattgcgatagcgtgaatttgaataaaaattgcgacagcgtgaattcaaataaaaatt 41218483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 48846181 - 48846245
Alignment:
Q  30 gcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaacatcattttcttca 97  Q
    ||||||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  48846181 gcctcttagtgttcaatgaagt---gctgctagaggaagctttgtttgtcgcaacatcattttcttca 48846245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 1536572 - 1536521
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1536572 aaattattgtatcaattattgtattgtatgaattctattaataaaatgagat 1536521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 18238499 - 18238448
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaatt 369  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  18238499 aataaatattgcgatagcgtgaattcgaataaaaattgcgacagcgtgaatt 18238448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 383
Target Start/End: Complemental strand, 18238551 - 18238488
Alignment:
Q  320 taaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||| |||||    
T  18238551 taaaaattgcgatagcgtgaattcaaataaaaattgcgatagcgtgaattcgaataaatattgc 18238488  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 41218573 - 41218502
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    ||||||||||| ||||||||||||||||||||| ||||| | ||||||||||  |||||||||||| |||||    
T  41218573 aataaaaattgtgatagcgtgaattcgaataaatattgcgatagcgtgaatttgaataaaaattgcgacagc 41218502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 26500544 - 26500498
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  26500544 agcgtgaattcgaataaaaattgcgacagcgtgaattcaaataaaaa 26500498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 26592169 - 26592215
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  26592169 agcgtgaattcgaataaaaattgcgacagcgtgaattcaaataaaaa 26592215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 34353903 - 34353858
Alignment:
Q  130 ttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  34353903 ttgtatcaattattgtattgtatgaattctattaataaaataagat 34353858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 18238931 - 18238880
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||||||||||||||||||||||||||| |||||||| ||||||    
T  18238931 aaattattgtatcaattattgtattgtatgaattcttttaataaattgagat 18238880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 2356998 - 2356949
Alignment:
Q  334 gcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgc 383  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  2356998 gcgtgaattggaataaaaattgcgacggcgtgaattcaaataaaaattgc 2356949  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 21154342 - 21154383
Alignment:
Q  134 atcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  21154342 atcaattattgtattgtatgaattctattaataaaataagat 21154383  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 2356987 - 2356925
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaat 380  Q
    ||||||||||||||  |||||||||| |||||||||||| ||| ||||| ||| | |||||||    
T  2356987 aataaaaattgcgacggcgtgaattcaaataaaaattgcgacaacgtgagttcgattaaaaat 2356925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 20378336 - 20378382
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||||||||    
T  20378336 agcgtgaattcaaataaaaattgcgacaacgtgaattcgaataaaaa 20378382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 41218879 - 41218849
Alignment:
Q  145 tattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||    
T  41218879 tattgtatgaattctattaataaaatgagat 41218849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 34353545 - 34353512
Alignment:
Q  332 tagcgtgaattcgaataaaaattgcaacagcgtg 365  Q
    |||||||||||| |||||||||||||||||||||    
T  34353545 tagcgtgaattcaaataaaaattgcaacagcgtg 34353512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 389
Target Start/End: Complemental strand, 34353544 - 34353515
Alignment:
Q  360 agcgtgaattcaaataaaaattgcaacagc 389  Q
    ||||||||||||||||||||||||||||||    
T  34353544 agcgtgaattcaaataaaaattgcaacagc 34353515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 20378346 - 20378382
Alignment:
Q  316 caaataaaaattgcgatagcgtgaattcgaataaaaa 352  Q
    |||||||||||||||| | ||||||||||||||||||    
T  20378346 caaataaaaattgcgacaacgtgaattcgaataaaaa 20378382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 38791589 - 38791638
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||  ||||||||||||||||||||  |||||||||||||||||    
T  38791589 aaattattgtaagaattattgtattgtatgaat--tattaataaaatgagat 38791638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 48218897 - 48218946
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||  ||||||||||||||||||||  |||||||||||||||||    
T  48218897 aaattattgtaagaattattgtattgtatgaat--tattaataaaatgagat 48218946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 35055351 - 35055415
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattg 382  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  35055351 aataaaaattgcgacagcgtgaattcgaataaaaattgcgacagcgtgaattcgaataaaaattg 35055415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 320191 - 320254
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaatt 381  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  320191 aataaatactgcgatagcgtgaattcgaataaaaattgcgacagcgtgaattcaaataaaaatt 320254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 7016337 - 7016273
Alignment:
Q  30 gcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaacatcattttcttca 97  Q
    ||||||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  7016337 gcctcttagtgttcaatgaagt---gctgctagaggaagctttgtttgtcgcaacatcattttcttca 7016273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 35055328 - 35055395
Alignment:
Q  322 aaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||    
T  35055328 aaaaatgcgacagcgtgaattcgaataaaaattgcgacagcgtgaattcgaataaaaattgcgacagc 35055395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 319820 - 319865
Alignment:
Q  130 ttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  319820 ttgtatcaattattgtattgtatgaattctattaataaaatgagat 319865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 24174154 - 24174206
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagatg 176  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  24174154 aaattattgtatcaattattgtattttatgaattctattaataaaatgagatg 24174206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 14154111 - 14154162
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14154111 aaattattgtatcaattattgtattgtatgaattcaattaataaaatgagat 14154162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 35055378 - 35055439
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||| |||||||||||||||||||||||  | ||||||||||| ||||||||    
T  35055378 aataaaaattgcgacagcgtgaattcgaataaaaattgggaaagcgtgaattcgaataaaaa 35055439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 320165 - 320235
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaattgcaacagc 389  Q
    |||||||||||||| |||||||||||||||||| | ||| | ||||||||||| |||||||||||| |||||    
T  320165 aataaaaattgcga-agcgtgaattcgaataaatactgcgatagcgtgaattcgaataaaaattgcgacagc 320235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 802392 - 802354
Alignment:
Q  137 aattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||||||||||||||||||||||||||    
T  802392 aattattgtattgtatgaattctattaataaaatgagat 802354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 11718288 - 11718250
Alignment:
Q  137 aattattgtattgtatgaattctattaataaaatgagat 175  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  11718288 aattattgtattgtataaattctattaataaaatgagat 11718250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 35058043 - 35058081
Alignment:
Q  341 ttcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  35058043 ttcgaataaaaattgcgacagcgtgaattcgaataaaaa 35058081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 35058047 - 35058081
Alignment:
Q  318 aataaaaattgcgatagcgtgaattcgaataaaaa 352  Q
    |||||||||||||| ||||||||||||||||||||    
T  35058047 aataaaaattgcgacagcgtgaattcgaataaaaa 35058081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 35054050 - 35054099
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| |||||  ||||||||||||||||||||  |||||||||||||||||    
T  35054050 aaattattgtaagaattattgtattgtatgaat--tattaataaaatgagat 35054099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 3203 - 3152
Alignment:
Q  124 aaattgttgtatcaattattgtattgtatgaattctattaataaaatgagat 175  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  3203 aaattattttatcaattattgtattgtatgaattctattaataaaatgagat 3152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 2942 - 2896
Alignment:
Q  333 agcgtgaattcgaataaaaattgcaacagcgtgaattcaaataaaaa 379  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||    
T  2942 agcgtgaattcgaataaaaattgtgacagcgtgaattcgaataaaaa 2896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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