View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1259_low_16 (Length: 390)
Name: NF1259_low_16
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 6 - 363
Target Start/End: Original strand, 2619154 - 2619511
Alignment:
| Q |
6 |
aggagcagagaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattat |
105 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2619154 |
aggatcagtgaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattat |
2619253 |
T |
|
| Q |
106 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgtgggatattcaatagcacttggtggatcgtaagtatacctttaccatt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2619254 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgttggatattcaatagcacttggtggatcgtaagtatacctttaccctt |
2619353 |
T |
|
| Q |
206 |
catcttatttttatagttttctcagttcaaaagtttcatattttgtgggattaatgtttaagcagggttttaaaacatggtatgcgatcacaattatggc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2619354 |
catcttatttttatagttttctcagttcaaaagtttcatactttgtgggattaatgtttaagcagggttttaaaacatggtatgcgatcacgattatggc |
2619453 |
T |
|
| Q |
306 |
cgtgttatcatggttttaaagtctctggcaattatggagacatcgtcggtcatatttg |
363 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
2619454 |
cgtgttatcatggttttaaagtctgtggcaattatggagacatcgtcggtcatatttg |
2619511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 6 - 329
Target Start/End: Original strand, 2585463 - 2585786
Alignment:
| Q |
6 |
aggagcagagaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattat |
105 |
Q |
| |
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|||| ||| ||| ||||||||||||||||| |||||||| ||||| | |||||||||||||||| || ||||||| |||||||||| ||||| |||||| |
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|
| T |
2585463 |
aggatcagtgaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattat |
2585562 |
T |
|
| Q |
106 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgtgggatattcaatagcacttggtggatcgtaagtatacctttaccatt |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || | | | || |||| |||| ||||| ||| ||||||||||||||||||||||| || |
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|
| T |
2585563 |
ggtagcagaatggttatgtatcatggtgctaaaggtggtaccgtttattcagttggattttcattagcaattgctggatcgtaagtatacctttaccctt |
2585662 |
T |
|
| Q |
206 |
catcttatttttatagttttctcagttcaaaagtttcatattttgtgggattaatgtttaagcagggttttaaaacatggtatgcgatcacaattatggc |
305 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||| || |||||| |||||||| |
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|
| T |
2585663 |
catcttatatttatagttttctcagttcaaaagtttcatactttgtgggataaaattttaagcagggttttaaaacacggtttgtgatcacgattatggc |
2585762 |
T |
|
| Q |
306 |
cgtgttatcatggttttaaagtct |
329 |
Q |
| |
|
||||||||||| |||||||||||| |
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|
| T |
2585763 |
cgtgttatcatagttttaaagtct |
2585786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 2678231 - 2678035
Alignment:
| Q |
6 |
aggagcagagaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattat |
105 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||||||||||||| | |||||||||||||||| || |||||||| ||||||| || ||| ||| |||| |
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|
| T |
2678231 |
aggatcagtgaagttgggattgaaacaaggcttagctaaaggcttggccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttat |
2678132 |
T |
|
| Q |
106 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgtgggatattcaatagcacttggtggatcgtaagtatacctttacc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||| ||||||| |
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|
| T |
2678131 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgttggagcatcattagcacttggtggattgtaagtatatctttacc |
2678035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 2573753 - 2573564
Alignment:
| Q |
6 |
aggagcagagaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattat |
105 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |
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|
| T |
2573753 |
aggatcagtgaaattgggattgaaacaaggcttggcgaaaggcataggcataggaagcaatggtcttgtttttgctgtatggtctttgatgtcatattat |
2573654 |
T |
|
| Q |
106 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgtgggatattcaatagcacttggtggatcgtaagtatac |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | | || ||| ||||||| ||||||| |||| |||| ||||| |
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|
| T |
2573653 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtttattcagttggaatttcaataacacttggaggattgtaattatac |
2573564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 2601219 - 2601092
Alignment:
| Q |
19 |
ttgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattatggtagcagaatgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||||||||| |
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|
| T |
2601219 |
ttgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttgtttttgccgtatggtcgttgatgtcctattatggtagcagaatgg |
2601120 |
T |
|
| Q |
119 |
tcatgtatcatggtgctaaaggtggtac |
146 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
2601119 |
tcatgtatcatggtgctaaaggtggtac |
2601092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 2646013 - 2645817
Alignment:
| Q |
6 |
aggagcagagaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattat |
105 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||||| || | |||||||||||||||| || ||||||| || ||||| ||| | |||||| |
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|
| T |
2646013 |
aggatcagtgaagttgggattgaaacaaggcttagctaaaggttttgccataggaagcaatggtgttgtttttgcaatagcttcttttatgacttattat |
2645914 |
T |
|
| Q |
106 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgtgggatattcaatagcacttggtggatcgtaagtatacctttacc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | ||| ||| ||| ||||||||||||||| |||| ||||| |||||| |
|
|
| T |
2645913 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtttataatgttggagcttccttagcacttggtggattgtaattatacttttacc |
2645817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 2431983 - 2432163
Alignment:
| Q |
15 |
gaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattatggtagcaga |
114 |
Q |
| |
|
|||||| || ||||||||||| || ||||||||||||| |||||||||||||||| || | | |||| |||||||||| || ||| |||||||||| | |
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|
| T |
2431983 |
gaaattaggtttgaaacaaggtttggctaaaggcttagccataggaagcaatggtgttgtctatgctatatggtctttaatattctactatggtagcata |
2432082 |
T |
|
| Q |
115 |
atggtcatgtatcatggtgctaaaggtggtactgtatttgctgtgggatattcaatagcacttggtggatcgtaagtatac |
195 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| || ||| || ||||| ||||||||| |||||||||| |
|
|
| T |
2432083 |
atggtcatgtatcatggtgctaaaggcggtacagtatttgtagttggagtaacattagcaattggtggattgtaagtatac |
2432163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 2448009 - 2448158
Alignment:
| Q |
6 |
aggagcagagaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattat |
105 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||| | ||||||||||| ||||||||||||| | || | | | | ||||| ||| ||| | |||||| |
|
|
| T |
2448009 |
aggatcagtgaagttgggattgaaacaaggcttggttaaaggcttagctataggaagcaatgctattgtgtatattcaatggtgttttatgtcatattat |
2448108 |
T |
|
| Q |
106 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgc |
155 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2448109 |
ggtagtagaatggtcatgtatcatggtgctaaaggtggtactgtatttgc |
2448158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 33801854 - 33801957
Alignment:
| Q |
15 |
gaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattatggtagcaga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33801854 |
gaaattgggattgaaacaaggcttagctaaaggcttaagcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattatggtagcaga |
33801953 |
T |
|
| Q |
115 |
atgg |
118 |
Q |
| |
|
|||| |
|
|
| T |
33801954 |
atgg |
33801957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 53664779 - 53664676
Alignment:
| Q |
15 |
gaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattatggtagcaga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53664779 |
gaaattgggattgaaacaaggcttagctaaaggcttaagcataggaagtaatggtcttctttttgctgtatggtctttgatggcctattatggtagcaga |
53664680 |
T |
|
| Q |
115 |
atgg |
118 |
Q |
| |
|
|||| |
|
|
| T |
53664679 |
atgg |
53664676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 17874351 - 17874230
Alignment:
| Q |
19 |
ttgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattatggtagcagaatgg |
118 |
Q |
| |
|
||||| || |||||||| ||||||||||| |||| || |||||||||||| || | ||||| | ||||| || ||| |||||||||||||| | ||| |
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|
| T |
17874351 |
ttgggtttaaaacaaggattagctaaaggtttagcaattggaagcaatggtgttgtctttgcaatttggtccttcatgtgctattatggtagcaaattgg |
17874252 |
T |
|
| Q |
119 |
tcatgtatcatggtgctaaagg |
140 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
17874251 |
ttatgtatcatggtgctaaagg |
17874230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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