View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_17 (Length: 388)
Name: NF1259_low_17
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 30 - 381
Target Start/End: Original strand, 24564324 - 24564674
Alignment:
| Q |
30 |
agaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564324 |
agaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatg |
24564423 |
T |
|
| Q |
130 |
tattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgta |
229 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24564424 |
tattggcatgtataaagcatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatgtaatcacatgta |
24564523 |
T |
|
| Q |
230 |
tctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcacc |
329 |
Q |
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||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24564524 |
tctatattttgtaggcgacgaatacgggaacgtatcagacacc-aaacacgcctatgattataagcgtcgatgccacataaattagtattgcaattcacc |
24564622 |
T |
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| Q |
330 |
aaattaaaattacattcacttcaattgatataaggaagtcccagtataatct |
381 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24564623 |
aaatgaaaattacattcacttcaattgatataaggaagtcccagtagaatct |
24564674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 32 - 370
Target Start/End: Original strand, 9800553 - 9800890
Alignment:
| Q |
32 |
aaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgta |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9800553 |
aaaggccatatggccccttaacttagctgactaatttaaatgtatatttgtgcccaccaagttactcaatgaatatggttatgaatgggtattaaatgta |
9800652 |
T |
|
| Q |
132 |
ttagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatc |
231 |
Q |
| |
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||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
9800653 |
ttagcatgtataaagcatcagcatatacatagagacactaacatctgaataccgataatta-tttaaaaaataatataattcaatctattcacatgtatc |
9800751 |
T |
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| Q |
232 |
tatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatgatt-ataagcgtcgatgacacataaattagtattgcaattcacca |
330 |
Q |
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|||||||||| || | ||||||| ||||| ||| | ||||| |||||||||||||||| |||||| |||||| ||||||||||| ||||||||| |||| |
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| T |
9800752 |
tatatcttgtcggtgtcgaatactgggacatatgagacacc-aaacacgcctatgattaataagcttcgatgctacataaattagcattgcaatttacca |
9800850 |
T |
|
| Q |
331 |
aattaaaattacattcacttcaattgatataaggaagtcc |
370 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
9800851 |
aatgaaaattacattcatttcaattgatataaggaagtcc |
9800890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 44338364 - 44338689
Alignment:
| Q |
30 |
agaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatg-aatatggtttgg-aatgggtattaaa |
127 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||| ||||||||| |||||| || |||||| || ||||| ||||||| |
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| T |
44338364 |
agaaaggccatatggctccttaaattagttgactaatttaaaggtatatttgcgcacaccaagttagtcaatgaaacatggttaggaaatggctattaaa |
44338463 |
T |
|
| Q |
128 |
tgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatg |
227 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||| |||||| |||||| |||||||| ||| | |||||| | |||| |||||||||| ||| |
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|
| T |
44338464 |
tgtattagcatgtataaaacgtcgacatatacccagagacattaacatgtgaacaaagacaatta-tttgagaaataacacaattaaatataatcatatg |
44338562 |
T |
|
| Q |
228 |
tatctatatcttgtaggcgacgaatacggggacgtatcaaacac-caaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattc |
326 |
Q |
| |
|
|||||||||| ||| | |||||| ||||||| || |||| | | |||| | |||||| |||||| | |||| ||||||||||| |||||||||| |
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|
| T |
44338563 |
tatctatatcatgtcgatctcgaatattgggacgtttcggacacgctagacacacatatgataataagcattgatgctacataaattagcattgcaattc |
44338662 |
T |
|
| Q |
327 |
accaaattaaaattacattcacttcaa |
353 |
Q |
| |
|
||||||| ||||||||||||||||||| |
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| T |
44338663 |
accaaatgaaaattacattcacttcaa |
44338689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 45535139 - 45534957
Alignment:
| Q |
30 |
agaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatg |
129 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||| ||||| ||| || |
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|
| T |
45535139 |
agaaaggccatacggccccttaacttagctaactaatttaaatgtatagttgcgcacaccaagttactcattgaatctggttaggactgggtgctaagtg |
45535040 |
T |
|
| Q |
130 |
tattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataatt |
212 |
Q |
| |
|
||||||||||||||||| | | ||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||| |
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|
| T |
45535039 |
tattagcatgtataaagcaacaacatatacatagagacactaacatgtgaacactgataattattttaaaaaataatataatt |
45534957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 248 - 363
Target Start/End: Complemental strand, 45534943 - 45534829
Alignment:
| Q |
248 |
cgaatacggggacgtatcaaacaccaaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattca |
347 |
Q |
| |
|
||||||||||||||||| | |||||||| || ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
45534943 |
cgaatacggggacgtattagacaccaaa-catgcctatgattataagtgtcgacgctacataaattagcattgcaattcaccaaataaaaattacattca |
45534845 |
T |
|
| Q |
348 |
cttcaattgatataag |
363 |
Q |
| |
|
|||||||||| ||||| |
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| T |
45534844 |
cttcaattgacataag |
45534829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 34745205 - 34745241
Alignment:
| Q |
195 |
ttaaaaaataatataattcaatataatcacatgtatc |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34745205 |
ttaaaaaataacataattcaatataatcacatgtatc |
34745241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 29519195 - 29519244
Alignment:
| Q |
179 |
aacaccgacaattattttaaaaaataatataattcaatataatcacatgt |
228 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||| |||| |||||| |
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|
| T |
29519195 |
aacaccgataataattttaaaaaatcatataattcaatgtaataacatgt |
29519244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 23095791 - 23095846
Alignment:
| Q |
305 |
acataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatat |
360 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||| |||||| || ||||||| |
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|
| T |
23095791 |
acataaattagcattgcaatttaccaaatgaaaattaccttcactacagttgatat |
23095846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 19679993 - 19680033
Alignment:
| Q |
192 |
attttaaaaaataatataattcaatataatcacatgtatct |
232 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
19679993 |
attttaaaaaataacataattgaatataatcacatgcatct |
19680033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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