View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_19 (Length: 385)
Name: NF1259_low_19
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 33 - 371
Target Start/End: Complemental strand, 43114617 - 43114276
Alignment:
| Q |
33 |
caattttagatgtcaccaatcaccataatctctaacatatactaggttacaacactattatgttcaaatgtgaccgattagatccacgttcactataaat |
132 |
Q |
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| T |
43114617 |
caattttagatgtcaccaatcaccataatctcaaacatatactaggttacaacactattatgttcaaatgtgaccgattaaatccacgttcactatgaat |
43114518 |
T |
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| Q |
133 |
agataaaatattagatatactatgataaacgactcatagttaaatgatgttttagcagagatattatgtttctttttcgtgttttgaagcattaat---c |
229 |
Q |
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| T |
43114517 |
agataaaatattggatatactatgataaatgactcatagttaagtgatattttagcatagatattatgtttctttttcgtgttttgaagcattaatttgt |
43114418 |
T |
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| Q |
230 |
tgttgctgtcaactctccacctatatcatgaacacaaattgtcttctccagctgatctaaccaaagcattctaatactcaaaatacaaaacaatgacaca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43114417 |
tgttgctgtcaactctccacctatatcatgaacacagattgtcttctccagctaatctaaccaaagcattctaatactcaaaatacaaaacaatgacaca |
43114318 |
T |
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| Q |
330 |
tatccccacatttctgcaaaaaggctgattcctacacccccc |
371 |
Q |
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| T |
43114317 |
tatccccacatttctgcaaaaaggctgattcctacacccccc |
43114276 |
T |
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