View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_23 (Length: 344)
Name: NF1259_low_23
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_23 |
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| [»] scaffold1543 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 21590964 - 21590662
Alignment:
| Q |
13 |
taggatgggtatggacgctctacaagtcttcccggttagccaggctgctgctaaccagcgtgctggtcgagctggtcgaactggccctgggacatgctat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21590964 |
taggatgggtatggacgctctacaagtcttcccggttagccaggctgctgctaaccagcgtgctggtcgagctggtcgaactggccctgggacatgctat |
21590865 |
T |
|
| Q |
113 |
cggttgtatacagagcgtgcttacctaaatgaaatgttgcccagtcctgttccagagattcaaagaactaaccttggcaatgtcgtcttgttgctgaaat |
212 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21590864 |
cggttgtatacagagagtgcttacctaaatgaaatgttggccagtcctgttccagagattcagagaactaaccttggcaatgtcgtcttgttgctgaaat |
21590765 |
T |
|
| Q |
213 |
ctcttaaagttgaaaatttactcgactttgatttcattgatccacctccgcaggataatattctcaattctatgtaccagttgtggatgttgggtgccct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21590764 |
ctcttaaagttgaaaatttactcgactttgatttcattgatccacctccgcaggataatattcttaattctatgtaccagttgtggatgttgggtgccct |
21590665 |
T |
|
| Q |
313 |
taa |
315 |
Q |
| |
|
||| |
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|
| T |
21590664 |
taa |
21590662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 21625166 - 21624864
Alignment:
| Q |
13 |
taggatgggtatggacgctctacaagtcttcccggttagccaggctgctgctaaccagcgtgctggtcgagctggtcgaactggccctgggacatgctat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21625166 |
taggatgggtatggacgctctacaagtcttcccggttagccaggctgctgctaaccagcgtgctggtcgagctggtcgaactggccctggggcatgctat |
21625067 |
T |
|
| Q |
113 |
cggttgtatacagagcgtgcttacctaaatgaaatgttgcccagtcctgttccagagattcaaagaactaaccttggcaatgtcgtcttgttgctgaaat |
212 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21625066 |
cggttgtatacagagagtgcttacctaaatgaaatgttggccagtcctgttccagagattcagagaactaaccttggcaatgtcgtcttgttgctgaaat |
21624967 |
T |
|
| Q |
213 |
ctcttaaagttgaaaatttactcgactttgatttcattgatccacctccgcaggataatattctcaattctatgtaccagttgtggatgttgggtgccct |
312 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
21624966 |
ctcttaaagttgaaaatttacttgactttgatttcattgatccacctccgcaggataatattcttaattctatgtaccagttgtggatgttgggcgccct |
21624867 |
T |
|
| Q |
313 |
taa |
315 |
Q |
| |
|
||| |
|
|
| T |
21624866 |
taa |
21624864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1543 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold1543
Description:
Target: scaffold1543; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 925 - 623
Alignment:
| Q |
13 |
taggatgggtatggacgctctacaagtcttcccggttagccaggctgctgctaaccagcgtgctggtcgagctggtcgaactggccctgggacatgctat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
925 |
taggatgggtatggacgctctacaagtcttcccgtttagccaggctgctgctaaccagcgtgctggtcgagctggtcgaactggccctgggacatgctat |
826 |
T |
|
| Q |
113 |
cggttgtatacagagcgtgcttacctaaatgaaatgttgcccagtcctgttccagagattcaaagaactaaccttggcaatgtcgtcttgttgctgaaat |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |
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| T |
825 |
cggttgtatacagagagtgcttacctaaatgaaatgttggccagtcctgttccagagattcagagaactaaccttggcaatctggtcttgttgctgaaat |
726 |
T |
|
| Q |
213 |
ctcttaaagttgaaaatttactcgactttgatttcattgatccacctccgcaggataatattctcaattctatgtaccagttgtggatgttgggtgccct |
312 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
725 |
ctcttaaagttgaaaatttactcaactttgatttcatcgatccacctccgcgggataatattcttaattctatgtaccagttgttgatgttgggtgccct |
626 |
T |
|
| Q |
313 |
taa |
315 |
Q |
| |
|
||| |
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|
| T |
625 |
taa |
623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 42099923 - 42100221
Alignment:
| Q |
17 |
atgggtatggacgctctacaagtcttcccggttagccaggctgctgctaaccagcgtgctggtcgagctggtcgaactggccctgggacatgctatcggt |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42099923 |
atgggtatggacgctcttcaagtcttccctgttagccgcgctgctgctgaccagcgtgctggtcgagctggtcgaactggccctggtacatgctatcggt |
42100022 |
T |
|
| Q |
117 |
tgtatacagagcgtgcttacctaaatgaaatgttgcccagtcctgttccagagattcaaagaactaaccttggcaatgtcgtcttgttgctgaaatctct |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
42100023 |
tgtatacagagagtgcttacctaaatgaaatgttggccagtcctgttccagagatccaaagaactaaccttggcaatgtggtcttgttgctgaaatctct |
42100122 |
T |
|
| Q |
217 |
taaagttgaaaatttactcgactttgatttcattgatccacctccgcaggataatattctcaattctatgtaccagttgtggatgttgggtgcccttaa |
315 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
42100123 |
taaagttgaaaatttactcgactttgatttcatggatccacctccgcaggataatattctcaattctatgtaccagttgtgggtgttgggcgcccttaa |
42100221 |
T |
|
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