View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_25 (Length: 318)
Name: NF1259_low_25
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 20450129 - 20449847
Alignment:
| Q |
8 |
gagcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtaga |
107 |
Q |
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| T |
20450129 |
gagcaaagacctagcaaaagatgcatagagtttgcaaataaaaccgatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgcaga |
20450030 |
T |
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| Q |
108 |
ctgtccttccaatttaaccttctttcaaactattttacttacattttatcttatatgctatcatttggaaaattctaatgataatttttggtttacatgc |
207 |
Q |
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| T |
20450029 |
ttgtccttccaatttaaccttctttcaaactattttacttacattttatcttatatgctatcatttggaaaattctaatgataatttttggtttacatgc |
20449930 |
T |
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| Q |
208 |
agagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtctt |
290 |
Q |
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| T |
20449929 |
agagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtctt |
20449847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 20278381 - 20278113
Alignment:
| Q |
14 |
agacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtagactgtcc |
113 |
Q |
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| T |
20278381 |
agacctagcaaaagatacatagagtttgctaataaaacagatcaatacattaattaattcaatacaatctatat-----------ttgtgtagattgtcc |
20278293 |
T |
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| Q |
114 |
ttccaatttaaccttctttcaaactattttacttacattttatcttatatgctat----catttggaaaattctaatgataatttttggtttacatgcag |
209 |
Q |
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| T |
20278292 |
tagcaatttaaccttctttcaaactattttacttacattttatctt-tatgctatatatcagttggaaaattctaatgataatttttggcttacatgcag |
20278194 |
T |
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| Q |
210 |
agaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtctt |
290 |
Q |
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| T |
20278193 |
agaaacattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatcaatatctccggcatgtctt |
20278113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 20439423 - 20439195
Alignment:
| Q |
66 |
attaattcaatacaatctatatgtgatctatatttgtgtagactgtccttccaatttaaccttctttcaaactattttacttacattttatcttatatgc |
165 |
Q |
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| T |
20439423 |
attaaatcaatacaatctatatccgatctatatttatgtagattgtcctagcaatttaaccttctttctaactattttacttacattttatcttatatgc |
20439324 |
T |
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| Q |
166 |
tat----catttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttggg |
261 |
Q |
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| T |
20439323 |
tatatatcagttggaaaattctaatgataatttttggtttacatgcagagaaacattgaaatcaattcccgaagaaaggaggttgggaacccgagttggg |
20439224 |
T |
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| Q |
262 |
tggagccattgatatctccggcatgtctt |
290 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
20439223 |
tggagccattgatatctcccacatgtctt |
20439195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 172 - 291
Target Start/End: Complemental strand, 20443116 - 20442997
Alignment:
| Q |
172 |
ttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatt |
271 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20443116 |
ttggaaaattctaatgatagtttttgctttacatgcagagaaaaattgaaatcaattcccggagaaaggaggttggaaactcgagttgggtggagccatt |
20443017 |
T |
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| Q |
272 |
gatatctccggcatgtcttg |
291 |
Q |
| |
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|| ||||||||||||||| |
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| T |
20443016 |
agtaactccggcatgtcttg |
20442997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 20461553 - 20461455
Alignment:
| Q |
172 |
ttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccat |
270 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20461553 |
ttggaaaattctaacgataatgtttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccat |
20461455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 290
Target Start/End: Complemental strand, 20475763 - 20475651
Alignment:
| Q |
178 |
aattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatc |
277 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| | | | |
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| T |
20475763 |
aattctaatgataatttttggtttacatgcagagaaaaattcaaaccaatttccgaagaaaggaggttggaaactcgagttgggtggagccatcggtgac |
20475664 |
T |
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| Q |
278 |
tccggcatgtctt |
290 |
Q |
| |
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||||||||||||| |
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| T |
20475663 |
tccggcatgtctt |
20475651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 20430942 - 20430792
Alignment:
| Q |
8 |
gagcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtaga |
107 |
Q |
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||||| |||||||| ||||||||||| ||||||||| |||||| | | ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
20430942 |
gagcaaagacctagtaaaagatacatggagtttgca--taaaaccgttaaacaaattaattaattcaaaacaatctatatctgatctatatttgtgtaga |
20430845 |
T |
|
| Q |
108 |
ctgtccttccaatttaaccttctttcaaactattttacttac-attttatctt |
159 |
Q |
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| |||| |||||||||||||||| |||| ||||||||||| |||||||||| |
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| T |
20430844 |
ttttcctagcaatttaaccttcttttaaaccattttacttacaattttatctt |
20430792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 20475964 - 20475823
Alignment:
| Q |
9 |
agcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtagac |
108 |
Q |
| |
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|||| |||| ||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| || ||||| |||| ||| ||||||||||||||| |
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| T |
20475964 |
agcaaagacttagcaaaagatacatggagtttgcaaataaaaccgataaacaaattaattaattaaaaacaatagatatctgaactatatttgtgtagat |
20475865 |
T |
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| Q |
109 |
tgtccttccaatttaaccttctttcaaactattttacttaca |
150 |
Q |
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| T |
20475864 |
tttcctaccaatttaaccttcttttaaactattttatttaca |
20475823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 20430754 - 20430630
Alignment:
| Q |
166 |
tatcatttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtgga |
265 |
Q |
| |
|
||||| ||||||||| | |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
20430754 |
tatcagttggaaaatacaaatgttaatttttggtttacatgcagggaaaatttgaaatcaattcccgaagaaaggaggttggaaactctagatgggtgga |
20430655 |
T |
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| Q |
266 |
gccattgatatctccggcatgtctt |
290 |
Q |
| |
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||||| || |||||||||||||| |
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| T |
20430654 |
gccatcagtaactccggcatgtctt |
20430630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 20461745 - 20461634
Alignment:
| Q |
21 |
gcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtagactgtccttccaat |
120 |
Q |
| |
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||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||| | |||| ||||| |
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| T |
20461745 |
gcaaaagatacatgtagtttgcaaatataaccgataaacaaattaattaattcaaaacaatagatatctaatctatatttgtgtagattttcctaccaat |
20461646 |
T |
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| Q |
121 |
ttaaccttcttt |
132 |
Q |
| |
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||||| |||||| |
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| T |
20461645 |
ttaactttcttt |
20461634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 20439650 - 20439584
Alignment:
| Q |
8 |
gagcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattca |
74 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
20439650 |
gagcaaagacctagcaaaagatacatagaatttgcaaataaaacagatcaataaattaattaattca |
20439584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 20443260 - 20443188
Alignment:
| Q |
35 |
gagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtaga |
107 |
Q |
| |
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||||||||||||||||||| | ||||| ||||||||||| | ||||||||||| ||||||||||||||||||| |
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| T |
20443260 |
gagtttgcaaataaaacagttaaacaatttaattaattctaaacaatctatatctgatctatatttgtgtaga |
20443188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 37065596 - 37065530
Alignment:
| Q |
198 |
gtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtgg |
264 |
Q |
| |
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||||||||||||| |||| || ||| || || | |||||||||||||||||||||||||||||||| |
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| T |
37065596 |
gtttacatgcagaaaaaatttaaaaaaaactctcaaagaaaggaggttggaaactcgagttgggtgg |
37065530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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