View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_31 (Length: 301)
Name: NF1259_low_31
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 42 - 273
Target Start/End: Original strand, 47252931 - 47253162
Alignment:
| Q |
42 |
aatatgacatttgatttaggtaaagaacattattattaaaaatccacctaatttcagtccttcacaaaacatccagatccagctcagtttatttcgtgca |
141 |
Q |
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| T |
47252931 |
aatatgacatttgatttaggtaaagaacattattattaaaaatccacctaatttcagtccttcacaaaacatccagatccagctcagtttatttcgtgca |
47253030 |
T |
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| Q |
142 |
cactaacttggatcttagtcaaatcaaacaattactctgtcttttatttattaataaaacagctatgtttgacatgaatcctcttttctataatagaatt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
47253031 |
cactaacttggatcttagtcaaatcaaacaattactctgtcttttatttattaataaaacagctatgattgacatgaatcctcttttctttaatagaatt |
47253130 |
T |
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| Q |
242 |
gttaccttattggtttatggtcccttcttcct |
273 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
47253131 |
gttaccttattggtttatggtcccttcttcct |
47253162 |
T |
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