View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1259_low_32 (Length: 289)

Name: NF1259_low_32
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1259_low_32
NF1259_low_32
[»] chr4 (8 HSPs)
chr4 (53-204)||(35107062-35107214)
chr4 (55-169)||(35097886-35098000)
chr4 (55-169)||(35098175-35098289)
chr4 (55-168)||(36940478-36940591)
chr4 (53-169)||(35072682-35072798)
chr4 (55-170)||(36935858-36935974)
chr4 (58-116)||(36296508-36296566)
chr4 (203-238)||(35107235-35107270)
[»] chr6 (2 HSPs)
chr6 (53-171)||(24040736-24040854)
chr6 (58-169)||(24014181-24014292)
[»] chr5 (1 HSPs)
chr5 (55-128)||(34919162-34919235)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 35107062 - 35107214
Alignment:
Q  53 cagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagc 152  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  35107062 cagagaatgcgaaaatggatcaagtgaaagctgctatggagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaagcctgaagtcaaagc 35107161  T
Q  153 cattgaaatctctggtt-aactcagaacaagctttgttactcgtcttttgttt 204  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35107162 cattgaaatctctggttaaactcagaacaagctttgttactcgtcttttgttt 35107214  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 35097886 - 35098000
Alignment:
Q  55 gagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcca 154  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  |||    
T  35097886 gagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtcca 35097985  T
Q  155 ttgaaatctctggtt 169  Q
    |||||||||||||||    
T  35097986 ttgaaatctctggtt 35098000  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 35098175 - 35098289
Alignment:
Q  55 gagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcca 154  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  |||    
T  35098175 gagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtcca 35098274  T
Q  155 ttgaaatctctggtt 169  Q
    |||||||||||||||    
T  35098275 ttgaaatctctggtt 35098289  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 36940591 - 36940478
Alignment:
Q  55 gagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcca 154  Q
    |||||||| |||||||||||| ||||||||||||||||||||||  |||||||||||||||| |||||  ||||||||||||| | |||| | ||| |||    
T  36940591 gagaatgctaaaatggatcaaatgaaagctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaagttaaaacca 36940492  T
Q  155 ttgaaatctctggt 168  Q
    |||| |||||||||    
T  36940491 ttgatatctctggt 36940478  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 35072798 - 35072682
Alignment:
Q  53 cagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagc 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |    
T  35072798 cagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtc 35072699  T
Q  153 cattgaaatctctggtt 169  Q
    ||| |||||||||||||    
T  35072698 catcgaaatctctggtt 35072682  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 36935974 - 36935858
Alignment:
Q  55 gagaatgcgaaaatggatcaagtgaaagctgcaa-tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcc 153  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || ||  | |||||| | |||||||||||| | ||  ||    
T  36935974 gagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagacc 36935875  T
Q  154 attgaaatctctggtta 170  Q
    ||||| |||||||||||    
T  36935874 attgatatctctggtta 36935858  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 36296566 - 36296508
Alignment:
Q  58 aatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgt 116  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36296566 aatgccaagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgt 36296508  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 35107235 - 35107270
Alignment:
Q  203 ttgttttgtaatgcttactttgtttgtgatgtctgt 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  35107235 ttgttttgtaatgcttactttgtttgtgatgtctgt 35107270  T

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Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 24040854 - 24040736
Alignment:
Q  53 cagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||||| || | ||  |    
T  24040854 cagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcctcaagtgaagac 24040755  T
Q  153 cattgaaatctctggttaa 171  Q
    |||||| ||||||||||||    
T  24040754 cattgatatctctggttaa 24040736  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 24014292 - 24014181
Alignment:
Q  58 aatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattg 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| |    
T  24014292 aatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcg 24014193  T
Q  158 aaatctctggtt 169  Q
    ||||||||||||    
T  24014192 aaatctctggtt 24014181  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 34919162 - 34919235
Alignment:
Q  55 gagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaaga 128  Q
    |||||||  ||||||||||| || |||||||  ||||||||||| ||||| ||||| ||||| |||||||||||    
T  34919162 gagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga 34919235  T

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