View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_35 (Length: 275)
Name: NF1259_low_35
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_35 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 244
Target Start/End: Complemental strand, 16014234 - 16014022
Alignment:
| Q |
32 |
gagcacagaaacgcctgaacaattcccaaatcctgaatgactgatgcctaaaacatcattcagttccctaccattaattgtagaattggaatcaccgaca |
131 |
Q |
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| T |
16014234 |
gagcacagaaacacctgaacaattcccaaatcctgaatgactgatgcctaaaacatcattcaattccctaccattaaatgtagaattggaatcaccgaca |
16014135 |
T |
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| Q |
132 |
tttgcaaatacagggttctttagatttaccctgtctctaataaattcaaaagcgaattcctcacccgtttgtattgaataattctgtacagatttaacat |
231 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16014134 |
tttgaaaatacagggttctttagatttaccctgtctctaataaattcaaaagcgaattcctcacccgtttgtattgaataattctgtacagatttaacat |
16014035 |
T |
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| Q |
232 |
ctgtggtgctgct |
244 |
Q |
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||| |||||||| |
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| T |
16014034 |
ctgatgtgctgct |
16014022 |
T |
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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 64 - 184
Alignment:
| Q |
109 |
ttgtagaattggaatcaccgacatttgcaaatacagggttctttagatttaccctgtctctaataaattcaaaagcgaattcctcacccgtttgtattga |
208 |
Q |
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||||| |||| | ||||| |||||| | ||||||||| ||| | |||| |||| ||||| ||||| |||| || ||||||||||||||| ||||| || |
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| T |
64 |
ttgtataattaggatcactgacattcgaaaatacaggcttcccgatatttgccctatctctcataaactcaagagagaattcctcacccgtctgtatcga |
163 |
T |
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| Q |
209 |
ataattctgtacagatttaac |
229 |
Q |
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| T |
164 |
gtaatgctgtacaggtttaac |
184 |
T |
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