View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_7 (Length: 597)
Name: NF1259_low_7
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Complemental strand, 33589612 - 33589157
Alignment:
| Q |
8 |
caccacagatgctatgataccatgactgagaataatcaaccgggtccaaaaacacaaactcgttgttcgggtcgggtggctcaaaatatgtttcaagttg |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
33589612 |
caccatagatgctatgataccatgactgagaataatcaaccgggtccaaaaacacaaactcgttgttcggcacgggtgactcaaaatatgtttcaagttg |
33589513 |
T |
|
| Q |
108 |
tggtagttcaacaatctcaccaagatcatatggagttgaagaagaagaagatgttggcattggagaaggaggcggagcaaccatggaagcggctttggcg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
33589512 |
tggtagttcaacaatctcaccaagatcatatggagttgaagaagaagaagatgttggcatcggagaaggaggtggagcaaccatggaagcggctttggcg |
33589413 |
T |
|
| Q |
208 |
gctgcggcttgaatatctcttggcaagttagaagctggttgaggaagtgaagctgaaagttcagggaagttaaggattgccgatgagccttttaaggtaa |
307 |
Q |
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|| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33589412 |
gccgcggcttgaatatctcttggcgagttagaagttggttgaggaagtgaagctgaaagttcagggaagttaaggattgccgatgagccttttaaggtaa |
33589313 |
T |
|
| Q |
308 |
gtgcagccacgtcgtgtgcacgcgccgccatttcagccgtagcatacgttccaagccagattcgacttttctttcgtggttcacggatttccgataccca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33589312 |
gtgcagccacgtcgtgtgcacgcgccgccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggataccca |
33589213 |
T |
|
| Q |
408 |
ttttccccatgttcgcattctaactcctctataaagtgggtgattagggttatcac |
463 |
Q |
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| T |
33589212 |
ttttccccatgttcgcattctaactcctctataaagtgggtgattagggttatcac |
33589157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 169 - 459
Target Start/End: Complemental strand, 33602570 - 33602280
Alignment:
| Q |
169 |
ggagaaggaggcggagcaaccatggaagcggctttggcggctgcggcttgaatatctcttggcaagttagaagctggttgaggaagtgaagctgaaagtt |
268 |
Q |
| |
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|||| |||||| |||| |||||| || |||||||| | || || ||||||| ||||||||| |||| ||||||||| ||||||| ||||||||||| |
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| T |
33602570 |
ggaggaggaggaggaggaaccatagacgcggctttaactgcggcagcttgaacatctcttggagagttggaagctggtcttggaagtgtagctgaaagtt |
33602471 |
T |
|
| Q |
269 |
cagggaagttaaggattgccgatgagccttttaaggtaagtgcagccacgtcgtgtgcacgcgccgccatttcagccgtagcatacgttccaagccagat |
368 |
Q |
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| T |
33602470 |
cggggaagttaaggattgcagatgaaccttttatagtaagtgcagctgcatcgtgtgcacgggctgccatttcagcggttgcgaatgttcctagccagat |
33602371 |
T |
|
| Q |
369 |
tcgacttttctttcgtggttcacggatttccgatacccattttccccatgttcgcattctaactcctctataaagtgggtgattagggtta |
459 |
Q |
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||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||| || |||||||||| ||| || |||| |||| |
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| T |
33602370 |
tcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattcttacacctctataaactggatgcttagtgtta |
33602280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 43289982 - 43290111
Alignment:
| Q |
313 |
gccacgtcgtgtgcacgcgccgccatttcagccgtagcatacgttccaagccagattcgacttttctttcgtggttcacggatttccgatacccattttc |
412 |
Q |
| |
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|||||||| ||||| || || ||||| || | ||| ||| ||||||| |||||||| ||| | ||||||| ||||| |||||||| ||||||||||||| |
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| T |
43289982 |
gccacgtcatgtgctcgtgctgccatctccggcgtggcaaacgttccgagccagatccgattcttctttctcggttcgcggatttcggatacccattttc |
43290081 |
T |
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| Q |
413 |
cccatgttcgcattctaactcctctataaa |
442 |
Q |
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|||| | ||||||| ||||||||| |||| |
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| T |
43290082 |
cccaagcccgcattcgaactcctctgtaaa |
43290111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 427
Target Start/End: Original strand, 43561834 - 43561927
Alignment:
| Q |
334 |
gccatttcagccgtagcatacgttccaagccagattcgacttttctttcgtggttcacggatttccgatacccattttccccatgttcgcattc |
427 |
Q |
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|||||||||| ||||| || ||||||||||||||||| ||| || || ||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
43561834 |
gccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttccgatacccattttccccagcttcgcattc |
43561927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 440
Target Start/End: Original strand, 16357844 - 16357950
Alignment:
| Q |
334 |
gccatttcagccgtagcatacgttccaagccagattcgacttttctttcgtggttcacggatttccgatacccattttccccatgttcgcattctaactc |
433 |
Q |
| |
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||||||||||| |||| || ||||||||||| |||| ||||||| ||| ||||| ||||| ||||||||||||||||||| || |||||| || | |
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| T |
16357844 |
gccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacac |
16357943 |
T |
|
| Q |
434 |
ctctata |
440 |
Q |
| |
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||||||| |
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| T |
16357944 |
ctctata |
16357950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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