View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1259_low_8 (Length: 495)
Name: NF1259_low_8
Description: NF1259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1259_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 457
Target Start/End: Original strand, 39369346 - 39369814
Alignment:
| Q |
7 |
gaacgggatggactcaatgctcaagccaaacgaggttaatgttgcagagatattggtgaagcatataacggatgttgtaaaaacatatacgtttaaagat |
106 |
Q |
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| T |
39369346 |
gaacgggatggactcaatgctcaagccaaacgaggttaatgttgcagagatattggtgaagcatataacggatgttgttaaaacatatacgtttaaagat |
39369445 |
T |
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| Q |
107 |
gagaacgatgtaccatgcaaaatatcttttatcatgtcattattggtaagcgctgatgtcatgtaggtgcaatatatgctgttagttacttgctgcataa |
206 |
Q |
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| T |
39369446 |
gagaacgatgtaccatgcaaaatatcttttatcatgtcattattggtaagcgctgatgtcatgtaggtgcaatatatgctgttagttacttgttgcataa |
39369545 |
T |
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| Q |
207 |
cattatagtcagtgttattttctgtagggtaatttgatcgctgaagggca-----------------ctcagactcggatgatgcttaattttattcagg |
289 |
Q |
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| T |
39369546 |
cattatagtcagtgttattttctgtagggtaatttgatcgctgaagggcatagggtacttatcttttctcagactcggatgatgcttaattttattcagg |
39369645 |
T |
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| Q |
290 |
tcagttcagaaataacttctatttttattttacaatata-nnnnnnnnaaactgtcgaccacccaatcatttgctcaactatttctggtctgttggtgaa |
388 |
Q |
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| T |
39369646 |
tcagttcagaaataacttctatttgtattttacaatatatatttttttaaactgtcgaccacccaatcatttgctcaactatttctggtctgttggtgaa |
39369745 |
T |
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| Q |
389 |
ttattgtagttggactaggatgtgcataggtagcgattctataaaattttaataatttgaggtcatttt |
457 |
Q |
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| T |
39369746 |
ttattgtagttggactaggatgtgcataggtagcgattctataaaattttaataatttgaggtcatttt |
39369814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 39355171 - 39355414
Alignment:
| Q |
15 |
tggactcaatgctcaagccaaacgaggttaatgttgcagagatattggtgaagcatataacggatgttgtaaaaacatatacgtttaaagatgagaacga |
114 |
Q |
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|||| |||||||| |||||| | |||||||||||||| || | ||| | || ||||||| | ||||||| | ||||| ||| |||| |||| || | || |
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| T |
39355171 |
tggaatcaatgctaaagccagaggaggttaatgttgcggaaaaattagcgatgcatatagcagatgttgcagaaacagataagtttgaagacaagcatga |
39355270 |
T |
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| Q |
115 |
tgtaccatgcaaaatatcttttatcatgtcattattggtaagcgctgatgtcatgtaggtgcaatatatgctgttag-ttacttg-ctgcataacattat |
212 |
Q |
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|||| ||||||||||| ||| |||||||||||||||||||| || |||||||||| |||||||||| | ||| |||| || ||| ||| ||||| |
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| T |
39355271 |
tgtatcatgcaaaatagttttcatcatgtcattattggtaagtgccgatgtcatgtgcatgcaatatatcgtcatagtttacatgtttgcttaaaattat |
39355370 |
T |
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| Q |
213 |
agtcagtgttattttctgtagggtaatttgatcgctgaagggca |
256 |
Q |
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| T |
39355371 |
agtcagtgtcatctgctgtaggataatttgatccctgaagggca |
39355414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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