View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12600_high_22 (Length: 233)
Name: NF12600_high_22
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 36202358 - 36202152
Alignment:
| Q |
11 |
gaagcagagatgatgaaaatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36202358 |
gaagcagagatgatgaaaatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtac |
36202259 |
T |
|
| Q |
111 |
ggtatagatgaattaagactttgttttttctatcagttgcttgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36202258 |
ggtatagatgaattaagactttgttttttctattagttgcctgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataat |
36202159 |
T |
|
| Q |
211 |
gtgatgt |
217 |
Q |
| |
|
||||||| |
|
|
| T |
36202158 |
gtgatgt |
36202152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 36198939 - 36198800
Alignment:
| Q |
60 |
ctttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttg |
159 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||| |||| || |||||||||||||| | |||||| ||||| ||||||||||||||||| |
|
|
| T |
36198939 |
ctttggaaaacacaatgttggagagattagagattggtaagtgcttttta-ggtatagatgaatttacactttgcttttttggtcagttgcttgtgcttg |
36198841 |
T |
|
| Q |
160 |
taattctaagatatgactgattcagataataataataataa |
200 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
36198840 |
taattttaagatatgaccagttcagagaataataataataa |
36198800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 36214793 - 36214661
Alignment:
| Q |
61 |
tttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttgt |
160 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||||||| |||| || ||||||||| ||||||||||||| || ||| |||||||| ||||||||| |
|
|
| T |
36214793 |
tttggaaaacacaatgttggggagattagagattgacaagtgctttgt-tggtatagatcaattaagactttgcttattcggtcagttgcatgtgcttgt |
36214695 |
T |
|
| Q |
161 |
aattctaagatatgactgattcagataataataa |
194 |
Q |
| |
|
|||| ||||||||||| || |||||||||||| |
|
|
| T |
36214694 |
aattttaagatatgaccagtttagataataataa |
36214661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 36209923 - 36209877
Alignment:
| Q |
13 |
agcagagatgatgaaaatctgaagtcgaaacatgaacatagtttgga |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
36209923 |
agcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttgga |
36209877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 36184646 - 36184608
Alignment:
| Q |
10 |
agaagcagagatgatgaaaatctgaagtcgaaacatgaa |
48 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
36184646 |
agaagcagagttgatgaaaatctgaagtccaaacatgaa |
36184608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University