View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12600_high_23 (Length: 233)

Name: NF12600_high_23
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12600_high_23
NF12600_high_23
[»] chr5 (5 HSPs)
chr5 (1-227)||(37580361-37580587)
chr5 (14-113)||(357228-357327)
chr5 (14-90)||(3489209-3489286)
chr5 (14-112)||(3489263-3489361)
chr5 (73-131)||(34463879-34463936)
[»] chr7 (15 HSPs)
chr7 (1-227)||(3428998-3429224)
chr7 (14-113)||(16230265-16230364)
chr7 (59-131)||(803312-803383)
chr7 (14-129)||(13489575-13489690)
chr7 (14-112)||(16144925-16145023)
chr7 (14-112)||(29084545-29084643)
chr7 (14-90)||(16230341-16230418)
chr7 (73-131)||(16292204-16292261)
chr7 (14-90)||(2551555-2551632)
chr7 (14-90)||(16230395-16230472)
chr7 (16-90)||(16144873-16144948)
chr7 (14-90)||(2551501-2551578)
chr7 (14-54)||(15188119-15188160)
chr7 (14-90)||(15188192-15188269)
chr7 (162-218)||(1898658-1898714)
[»] chr3 (17 HSPs)
chr3 (1-227)||(3679233-3679459)
chr3 (1-227)||(30015811-30016037)
chr3 (14-201)||(15597917-15598098)
chr3 (14-123)||(4438145-4438255)
chr3 (14-123)||(18879613-18879722)
chr3 (14-113)||(7094140-7094239)
chr3 (14-123)||(5141980-5142089)
chr3 (14-123)||(30073316-30073425)
chr3 (14-112)||(24213715-24213813)
chr3 (14-90)||(11930500-11930577)
chr3 (67-131)||(6968566-6968629)
chr3 (14-112)||(6566328-6566426)
chr3 (73-131)||(20438335-20438392)
chr3 (73-131)||(41435500-41435557)
chr3 (14-90)||(6566403-6566480)
chr3 (14-118)||(15699509-15699613)
chr3 (14-90)||(22954498-22954575)
[»] scaffold0094 (1 HSPs)
scaffold0094 (14-201)||(40316-40498)
[»] chr1 (2 HSPs)
chr1 (14-129)||(13454647-13454762)
chr1 (14-113)||(22475122-22475221)
[»] chr8 (6 HSPs)
chr8 (14-129)||(25770369-25770483)
chr8 (14-123)||(19839237-19839346)
chr8 (14-90)||(14207067-14207144)
chr8 (14-90)||(14207121-14207198)
chr8 (14-51)||(23918944-23918982)
chr8 (162-218)||(16763322-16763378)
[»] chr6 (7 HSPs)
chr6 (14-123)||(23980181-23980290)
chr6 (14-118)||(25702179-25702283)
chr6 (14-112)||(18114501-18114599)
chr6 (14-90)||(18114576-18114653)
chr6 (14-54)||(18217684-18217725)
chr6 (161-218)||(23980335-23980392)
chr6 (162-218)||(27539899-27539955)
[»] scaffold0047 (2 HSPs)
scaffold0047 (14-113)||(85955-86054)
scaffold0047 (14-90)||(86031-86108)
[»] chr4 (7 HSPs)
chr4 (14-113)||(14734453-14734552)
chr4 (14-129)||(19762362-19762477)
chr4 (14-131)||(17302793-17302906)
chr4 (14-113)||(22151663-22151762)
chr4 (14-90)||(10789265-10789342)
chr4 (14-112)||(10789190-10789288)
chr4 (14-123)||(1887136-1887242)
[»] chr2 (4 HSPs)
chr2 (14-112)||(42388574-42388672)
chr2 (59-113)||(21765418-21765471)
chr2 (14-90)||(42388649-42388726)
chr2 (162-218)||(26729460-26729516)
[»] scaffold0632 (1 HSPs)
scaffold0632 (14-123)||(9092-9201)
[»] scaffold0014 (1 HSPs)
scaffold0014 (174-220)||(184355-184401)
[»] scaffold0782 (1 HSPs)
scaffold0782 (59-128)||(5759-5827)
[»] scaffold0545 (1 HSPs)
scaffold0545 (14-123)||(5267-5377)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-61)||(301101-301149)
[»] scaffold0046 (1 HSPs)
scaffold0046 (14-54)||(40371-40412)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37580587 - 37580361
Alignment:
Q  1 aaagtttccttggacaagataattccctttctaaaacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  37580587 aaagtttccttggacaagataattccctttctaaaacaaagtcaagggatagtcctacaaatagaaacaagttaattccctttttaacaaattgagccaa 37580488  T
Q  101 gggatagactccagagtacataatagaaagcataaaggataaaacaaacagggagctcttgagctcttgaagcagactactcctcaaaatctgaatgtgc 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37580487 gggatagactccaaagtacataatagaaagcataaaggataaaacaaacggggagctcttgagctcttgaagcagactactcctcgaaatctgaatgtgc 37580388  T
Q  201 accatcaaacaaatccatgatgtccat 227  Q
    |||||||||||||||||||| ||||||    
T  37580387 accatcaaacaaatccatgaagtccat 37580361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 357228 - 357327
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| |||||||||||  |||||| ||||||||||||||||||||    
T  357228 acaagataattccctttctaacaacaaagccaagggataaactttcaaaataaaacaagataattcccttta-aacaaagtgagccaagggatagactcc 357326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 3489209 - 3489286
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | |||| | ||||||| ||||||||||| ||||||    
T  3489209 acaagataattccctttctaacaacaaagccaagggataaactttcaaagaaaaacaagataattccctttctaacaa 3489286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 3489263 - 3489361
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| ||||||||||| ||||||    ||||||||||||||||||    
T  3489263 acaagataattccctttctaacaacaaagccaagggataaactttcaaaataaaacaagataattccctttctaacaacaa-agccaagggatagactcc 3489361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 34463936 - 34463879
Alignment:
Q  73 taattccctttttaacaaattgagccaagggatagactccagagtacataatagaaagc 131  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||||||    
T  34463936 taattcccttttta-caaactgagccaagggatagactccaaagttcataaaagaaagc 34463879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3428998 - 3429224
Alignment:
Q  1 aaagtttccttggacaagataattccctttctaaaacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  3428998 aaagtttccttggacaagataattccctttctaaaacaaagtcaagggatagtcctacaaatagaaacaagttaattccctttttaacaaattgagccaa 3429097  T
Q  101 gggatagactccagagtacataatagaaagcataaaggataaaacaaacagggagctcttgagctcttgaagcagactactcctcaaaatctgaatgtgc 200  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  3429098 gggatagactccaaagtacataatggaaagcataaaggataaaacaaacggggagttcttgagctcttgaagtagactactcctcgaaatctgaatgtgc 3429197  T
Q  201 accatcaaacaaatccatgatgtccat 227  Q
    |||||||||||||||||||| ||||||    
T  3429198 accatcaaacaaatccatgaagtccat 3429224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 16230364 - 16230265
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| |||||||||||  |||||| ||||||||||||||||||||    
T  16230364 acaagataattccctttctaacaacaaagccaagggataaactttcaaaataaaacaagataattcccttta-aacaaaatgagccaagggatagactcc 16230266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 803312 - 803383
Alignment:
Q  59 aaatagaaacaagttaattccctttttaacaaattgagccaagggatagactccagagtacataatagaaagc 131  Q
    ||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||||||    
T  803312 aaataaaaacaagataattcccttttta-caaactgagccaagggatagactccaaagttcataaaagaaagc 803383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 13489575 - 13489690
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||| || |||| ||||||| ||| |||||||| | ||||   ||||||| || ||||||||| |||||| ||||||||||||||||||||    
T  13489575 acaagataattcctttcctaacaacaaagccaaaggatagactttcaaagtaaaacaagatacttccctttt-aacaaactgagccaagggatagactcc 13489673  T
Q  113 agagtacataatagaaa 129  Q
    | |||| |||| |||||    
T  13489674 aaagtaaataacagaaa 13489690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 16144925 - 16145023
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| |||||||| ||| |||||| ||| ||||||||||||||||    
T  16144925 acaagataattccctttctaacaacaaagccaagggataaactttcaaaataaaacaagataattccc-tttcaacaaagtgaaccaagggatagactcc 16145023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 29084643 - 29084545
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| |||||||| ||| |||||| ||| ||||||||||||||||    
T  29084643 acaagataattccctttctaacaacaaagacaagggataaactttcaaaataaaacaagataattccc-tttcaacaaagtgaaccaagggatagactcc 29084545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 16230418 - 16230341
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | ||||   ||||||| ||||||||||| ||||||    
T  16230418 acaagataattccctttctaacaacaaagccaagggatagactttcaaagtaaaacaagataattccctttctaacaa 16230341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 16292204 - 16292261
Alignment:
Q  73 taattccctttttaacaaattgagccaagggatagactccagagtacataatagaaagc 131  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||||||    
T  16292204 taattcccttttta-caaactgagccaagggatagactccaaagttcataaaagaaagc 16292261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 2551632 - 2551555
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| ||||||||||| ||||||    
T  2551632 acaagataattccctttctaacaacaaagccaagggataaactttcaaaataaaacaagataattccctttctaacaa 2551555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 16230472 - 16230395
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| |||| ||||||| | ||||   ||||||| ||||||||||| ||||||    
T  16230472 acaagataattccctttctaacaacaaagccaagagatagactttcaaagtaaaacaagataattccctttctaacaa 16230395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 16144873 - 16144948
Alignment:
Q  16 aagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| ||||||||||| ||||||    
T  16144873 aagataattccctttctaacaacaaagccaagggataaactttcaaagtaaaacaagataattccctttctaacaa 16144948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 2551578 - 2551501
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||  || | ||||   ||||||| ||||||||||| ||||||    
T  2551578 acaagataattccctttctaacaacaaagccaagggatgaactttcaaagtaaaacaagataattccctttctaacaa 2551501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 15188160 - 15188119
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagac 54  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  15188160 acaagataattccctttctaacaacaaagccaagggatagac 15188119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 15188269 - 15188192
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||| |  | ||||   ||||||| ||||||||||| ||||||    
T  15188269 acaagataattccctttctaacaacaaagccaagggataaaatttcaaaggaaaacaagataattccctttctaacaa 15188192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 1898658 - 1898714
Alignment:
Q  162 agctcttgaagcagactactcctcaaaatctgaatgtgcaccatcaaacaaatccat 218  Q
    ||||| |||||| ||||| ||||||||||| ||||||| ||||||||| | ||||||    
T  1898658 agctcctgaagcggactaatcctcaaaatcagaatgtggaccatcaaagagatccat 1898714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3679459 - 3679233
Alignment:
Q  1 aaagtttccttggacaagataattccctttctaaaacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  3679459 aaagtttccttggacaagataattccctttctaaaacaaagtcaagggatagtcctacaaatagaaacaagttaattccctttttaacaaattgagccaa 3679360  T
Q  101 gggatagactccagagtacataatagaaagcataaaggataaaacaaacagggagctcttgagctcttgaagcagactactcctcaaaatctgaatgtgc 200  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  3679359 gggatagactccaaagtacataatggaaagcataaaggataaaacaaacggggagttcttgagctcttgaagtagactactcctcgaaatctgaatgtgc 3679260  T
Q  201 accatcaaacaaatccatgatgtccat 227  Q
    | |||||||||||||||||| ||||||    
T  3679259 atcatcaaacaaatccatgaagtccat 3679233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30016037 - 30015811
Alignment:
Q  1 aaagtttccttggacaagataattccctttctaaaacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  30016037 aaagtttccttggacaagataattccctttctaaaacaaagtcaagggatagtcctacaaatagaaacaagttaactccctttttaacaaattgagccaa 30015938  T
Q  101 gggatagactccagagtacataatagaaagcataaaggataaaacaaacagggagctcttgagctcttgaagcagactactcctcaaaatctgaatgtgc 200  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  30015937 gggatagactccaaagtacataatggaaagcataaaggataaaacaaacggggagttcttgagctcttgaagtagactactcctcgaaatctgaatgtgc 30015838  T
Q  201 accatcaaacaaatccatgatgtccat 227  Q
    |||||||||||||||||||| ||||||    
T  30015837 accatcaaacaaatccatgaagtccat 30015811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 15597917 - 15598098
Alignment:
Q  14 acaagataattccctttctaaaa-caaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||||| ||||| ||||||||| || | |||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15597917 acaagataattccctttctaaaaacaaagccaagggataaacttacaaattaaaacaagataattccctttttaacaaattgagccaagggatagactcc 15598016  T
Q  113 agagtacataatagaaagcataaaggataaaacaaacagggagctcttgagctcttgaagcagactactcctcaaaatctgaatgtgca 201  Q
    | ||    ||    ||| |||||| |||||||||||  || | | ||||||||||||||| ||||||||||||  ||||||||||||||    
T  15598017 aaag---cta----aaaacataaaagataaaacaaatgggaaacgcttgagctcttgaagtagactactcctcggaatctgaatgtgca 15598098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 4438255 - 4438145
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaa-tagaaacaagttaattccctttttaacaaattgagccaagggatagactc 111  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | |||| || |||| || |||||||||||| |||| | |||||||||||||||||||    
T  4438255 acaagataattccctttctaacaacaaagccaagggatagactttcaaagtaaaaaccagataattccctttt-aacagactgagccaagggatagactc 4438157  T
Q  112 cagagtacataa 123  Q
    || |||||||||    
T  4438156 caaagtacataa 4438145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 18879613 - 18879722
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | ||||   |||| || |||||||||||| |||| | |||||||||||| |||||||    
T  18879613 acaagataattccctttctaacaacaaagccaagggatagactttcaaagtaaaaccagataattccctttt-aacagactgagccaagggacagactcc 18879711  T
Q  113 agagtacataa 123  Q
    | |||||||||    
T  18879712 aaagtacataa 18879722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 7094140 - 7094239
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||| ||||||| | ||||   ||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  7094140 acaagataattccctttctaacaacaaagccaagagatagactttcaaagtaaaacaagataattccctttt-aacagactgagccaagggatagactcc 7094238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 5141980 - 5142089
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||| |||| || | ||||   ||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  5141980 acaagataattccctttctaacaacaaagccaagagataaactttcaaagtaaaacaagataattccctttt-aacagactgagccaagggatagactcc 5142078  T
Q  113 agagtacataa 123  Q
    | |||| ||||    
T  5142079 aaagtaaataa 5142089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 30073316 - 30073425
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |  || || ||  ||| |||||||||||| |||||| |||| |||||||||||||||    
T  30073316 acaagataattccctttctaacaacaaagccaagggatagactttaaagtaaaacaaagataattccctttt-aacaaactgagtcaagggatagactcc 30073414  T
Q  113 agagtacataa 123  Q
    | | |||||||    
T  30073415 aaaatacataa 30073425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 24213715 - 24213813
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | |||| | ||||||| ||||||||||| ||||||    ||||||||||||||||||    
T  24213715 acaagataattccctttctaacaacaaagccaagggataaactttcaaagaaaaacaagataattccctttctaacaacaa-agccaagggatagactcc 24213813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 11930500 - 11930577
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | |||| | ||||||| ||||||||||| ||||||    
T  11930500 acaagataattccctttctaacaacaaagccaagggataaactttcaaagaaaaacaagataattccctttctaacaa 11930577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 6968566 - 6968629
Alignment:
Q  67 acaagttaattccctttttaacaaattgagccaagggatagactccagagtacataatagaaagc 131  Q
    ||||| |||||||||||  |||||| ||||||||||||||||||||| ||||||||| |||||||    
T  6968566 acaagataattccctttc-aacaaactgagccaagggatagactccaaagtacataaaagaaagc 6968629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 6566426 - 6566328
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | ||||   |||| || ||||||||||| ||||||    ||||||||||||||||||    
T  6566426 acaagataattccctttctaacaacaaagccaagggatagactttcaaaataaaacgagataattccctttctaacaacaa-agccaagggatagactcc 6566328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 20438392 - 20438335
Alignment:
Q  73 taattccctttttaacaaattgagccaagggatagactccagagtacataatagaaagc 131  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||||||    
T  20438392 taattcccttttta-caaactgagccaagggatagactccaaagttcataaaagaaagc 20438335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 41435557 - 41435500
Alignment:
Q  73 taattccctttttaacaaattgagccaagggatagactccagagtacataatagaaagc 131  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||||||    
T  41435557 taattcccttttta-caaactgagccaagggatagactccaaagttcataaaagaaagc 41435500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 6566480 - 6566403
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| ||||||||||| ||||||    
T  6566480 acaagataattccctttctaacaacaaagccaagggataaactttcaaagtaaaacaagataattccctttctaacaa 6566403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 15699613 - 15699509
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    |||||||||||||||||| || ||||||| ||| |||||||| | ||||   ||||||| |||||||| |||||||| | |||||||||||  |||||||    
T  15699613 acaagataattccctttcaaacaacaaagccaaaggatagactttcaaagtaaaacaagataattccc-ttttaacatactgagccaaggggcagactcc 15699515  T
Q  113 agagta 118  Q
    | ||||    
T  15699514 aaagta 15699509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 22954575 - 22954498
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    |||||||||||||| |||||| ||||||| ||||||||| || | |||| | ||||||| ||||||||||| ||||||    
T  22954575 acaagataattccccttctaacaacaaagccaagggataaactttcaaagaaaaacaagataattccctttctaacaa 22954498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 40316 - 40498
Alignment:
Q  14 acaagataattccctttctaaaa-caaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||||| ||||| ||||||||| || | |||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40316 acaagataattccctttctaaaaacaaagccaagggataaacttacaaattaaaacaagataattccctttttaacaaattgagccaagggatagactcc 40415  T
Q  113 agagtacataatagaaagcataaaggataaaacaaacagggagctcttgagctcttgaagcagactactcctcaaaatctgaatgtgca 201  Q
    | ||       || ||| |||||| |||||||||||  || | | ||||||||||||||| ||||||||||||  ||||||||||||||    
T  40416 aaag------ctaaaaaacataaaagataaaacaaatgggaaacgcttgagctcttgaagtagactactcctcggaatctgaatgtgca 40498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 13454762 - 13454647
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | ||||   ||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  13454762 acaagataattccctttctaacaacaaagccaagggatagactttcaaagtaaaacaagataattccctttt-aacaaactgagccaagggatagactcc 13454664  T
Q  113 agagtacataatagaaa 129  Q
    | |||| |||| |||||    
T  13454663 aaagtaaataacagaaa 13454647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 22475221 - 22475122
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| |||||||||||  |||||| ||||||||||||||||||||    
T  22475221 acaagataattccctttctaacaacaaagccaagggataaactttcaaaataaaacaagataattccctttc-aacaaagtgagccaagggatagactcc 22475123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 25770483 - 25770369
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | ||||   ||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  25770483 acaagataattccctttctaacaacaaagccaagggatagactttcaaagt-aaacaagataattccctttt-aacaaactgagccaagggatagactcc 25770386  T
Q  113 agagtacataatagaaa 129  Q
    | |||| |||| |||||    
T  25770385 aaagtaaataacagaaa 25770369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 19839346 - 19839237
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | ||||   |||| || |||||||||||| |||| | ||||||||||||||||||||    
T  19839346 acaagataattccctttctaacaacaaagccaagggatagactttcaaagtaaaaccagataattccctttt-aacagactgagccaagggatagactcc 19839248  T
Q  113 agagtacataa 123  Q
    | |||||||||    
T  19839247 aaagtacataa 19839237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 14207144 - 14207067
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | |||| | ||||||| ||||||||||| ||||||    
T  14207144 acaagataattccctttctaacaacaaagccaagggataaactttcaaagaaaaacaagataattccctttctaacaa 14207067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 14207198 - 14207121
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | |||| | ||||||| ||||||||||| ||||||    
T  14207198 acaagataattccctttctaacaacaaagccaagggataaactttcaaagaaaaacaagataattccctttctaacaa 14207121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 23918982 - 23918944
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggata 51  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  23918982 acaagataattccctttctaacaacaaagtcaagggata 23918944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 16763378 - 16763322
Alignment:
Q  162 agctcttgaagcagactactcctcaaaatctgaatgtgcaccatcaaacaaatccat 218  Q
    ||||| |||||| ||||| ||||||||||| ||||||| ||||||||| | ||||||    
T  16763378 agctcctgaagcggactaatcctcaaaatcagaatgtggaccatcaaagagatccat 16763322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 23980181 - 23980290
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||| ||||||| | ||||   ||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  23980181 acaagataattccctttctaacaacaaagccaagagatagactttcaaagtaaaacaagataattccctttt-aacagactgagccaagggatagactcc 23980279  T
Q  113 agagtacataa 123  Q
    | |||||||||    
T  23980280 aaagtacataa 23980290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 25702283 - 25702179
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | ||||   ||| ||| |||||||||||| |||| |  |||||||||||||||||||    
T  25702283 acaagataattccctttctaacaacaaagccaagggatagactttcaaagtaaaataagataattccctttt-aacagaccgagccaagggatagactcc 25702185  T
Q  113 agagta 118  Q
    | ||||    
T  25702184 aaagta 25702179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 18114599 - 18114501
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||| || || | ||||   ||||||| |||||||| ||| |||||| ||| ||||||||||||||||    
T  18114599 acaagataattccctttctaacaacaaagccaaggggtaaactttcaaaataaaacaagataattccc-tttcaacaaagtgaaccaagggatagactcc 18114501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 18114653 - 18114576
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| |||| |||| || | ||||   ||||||| ||||||||||| ||||||    
T  18114653 acaagataattccctttctaacaacaaagccaagagataaactttcaaaataaaacaagataattccctttctaacaa 18114576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 18217684 - 18217725
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagac 54  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  18217684 acaagataattccctttctaacaacaaagccaagggatagac 18217725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 23980335 - 23980392
Alignment:
Q  161 gagctcttgaagcagactactcctcaaaatctgaatgtgcaccatcaaacaaatccat 218  Q
    |||||| |||||| ||||| ||||||||||| ||||||| ||||||||| | ||||||    
T  23980335 gagctcctgaagcggactagtcctcaaaatcagaatgtggaccatcaaaaagatccat 23980392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 27539955 - 27539899
Alignment:
Q  162 agctcttgaagcagactactcctcaaaatctgaatgtgcaccatcaaacaaatccat 218  Q
    ||||| |||||| ||||| ||||||||||| ||||||| ||||||||| | ||||||    
T  27539955 agctcctgaagcggactaatcctcaaaatcagaatgtggaccatcaaagagatccat 27539899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 86054 - 85955
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | ||||   ||||||| |||||||| ||| |||||| ||| ||||||||||||||||    
T  86054 acaagataattccctttctaacaacaaagccaagggatagactttcaaagtaaaacaagataattccc-tttaaacaaagtgaaccaagggatagactcc 85956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 86108 - 86031
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| |||| ||||||| | ||||   ||||||| ||||||||||| ||||||    
T  86108 acaagataattccctttctaacaacaaagccaagagatagactttcaaagtaaaacaagataattccctttctaacaa 86031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 14734453 - 14734552
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||| ||||||| | ||||   ||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  14734453 acaagataattccctttctaacaacaaagccaagagatagactttcaaagtaaaacaagataattccctttt-aacagactgagccaagggatagactcc 14734551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 19762477 - 19762362
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||| ||||||| | ||||   ||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  19762477 acaagataattccctttctaacaacaaagccaagagatagactttcaaagtaaaacaagataattccctttt-aacagactgagccaagggatagactcc 19762379  T
Q  113 agagtacataatagaaa 129  Q
      |||| |||| |||||    
T  19762378 caagtaaataaaagaaa 19762362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 17302793 - 17302906
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    |||||||||||| |||||||| ||||||| |||||||||||| | ||||       ||| ||||||| |||||| |||| ||||||||||||||||||||    
T  17302793 acaagataattctctttctaacaacaaagccaagggatagacttacaaagt-----aagataattccttttttaccaaactgagccaagggatagactcc 17302887  T
Q  113 agagtacataatagaaagc 131  Q
    | ||||||||| |||||||    
T  17302888 aaagtacataacagaaagc 17302906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 22151663 - 22151762
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| |||||||| ||| |||||| |||| |||||||||||||||    
T  22151663 acaagataattccctttctaacaacaaagccaagggataaactttcaaaataaaacaagataattccc-tttaaacaaagtgagtcaagggatagactcc 22151761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 10789342 - 10789265
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | |||| | ||||||| ||||||||||| ||||||    
T  10789342 acaagataattccctttctaacaacaaagccaagggataaactttcaaagaaaaacaagataattccctttctaacaa 10789265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 10789288 - 10789190
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| ||||||||||| ||||||    ||||||||||||||||||    
T  10789288 acaagataattccctttctaacaacaaagccaagggataaactttcaaaataaaacaagataattccctttctaacaacaa-agccaagggatagactcc 10789190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 1887136 - 1887242
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    |||||||||| |||||||||| ||||||| |||||| || || | ||||  | || ||| |||||||||||| |||||  ||||||||||||||||||||    
T  1887136 acaagataatcccctttctaacaacaaagccaaggggtaaactttcaaa--gtaa-aagataattccctttt-aacaacctgagccaagggatagactcc 1887231  T
Q  113 agagtacataa 123  Q
    | |||||||||    
T  1887232 aaagtacataa 1887242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 42388672 - 42388574
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| |||||||||||  |||||| ||||||||||||||||||||    
T  42388672 acaagataattccctttctaacaacaaagccaagggataaactttcaaaataaaacaagataattccctttc-aacaaaatgagccaagggatagactcc 42388574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 21765418 - 21765471
Alignment:
Q  59 aaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcca 113  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  21765418 aaatagaaacaagataattcccttttt-acaaactgagccaagggatagactcca 21765471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 42388726 - 42388649
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaa 90  Q
    ||||||||||||||||||||| ||||||| ||||||||| || | ||||   ||||||| ||||||||||| ||||||    
T  42388726 acaagataattccctttctaacaacaaagccaagggataaactttcaaagtaaaacaagataattccctttctaacaa 42388649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 26729460 - 26729516
Alignment:
Q  162 agctcttgaagcagactactcctcaaaatctgaatgtgcaccatcaaacaaatccat 218  Q
    ||||| |||||| ||||| ||||||||||| ||||||| ||||||||| | ||||||    
T  26729460 agctcctgaagcggactaatcctcaaaatcagaatgtggaccatcaaagagatccat 26729516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 9201 - 9092
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagactcc 112  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |  || || ||  ||| |||||||||||| |||||| |||| |||||||||||||||    
T  9201 acaagataattccctttctaacaacaaagccaagggatagactttaaagtaaaacaaagataattccctttt-aacaaactgagtcaagggatagactcc 9103  T
Q  113 agagtacataa 123  Q
    | | |||||||    
T  9102 aaaatacataa 9092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 184355 - 184401
Alignment:
Q  174 agactactcctcaaaatctgaatgtgcaccatcaaacaaatccatga 220  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  184355 agactactcctcgaaatctgaatgtgcaccatcaaacaaatccatga 184401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0782 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0782
Description:

Target: scaffold0782; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 5827 - 5759
Alignment:
Q  59 aaatagaaacaagttaattccctttttaacaaattgagccaagggatagactccagagtacataatagaa 128  Q
    ||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||| ||| |||| |||||    
T  5827 aaataaaaacaagataattcccttttta-caaactgagccaagggatagactccaaagttcatactagaa 5759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0545 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0545
Description:

Target: scaffold0545; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 5267 - 5377
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagac--ctgcaaatagaaacaagttaattccctttttaacaaattgagccaagggatagact 110  Q
    ||||||||||||||||||||| ||||||| ||||||||||||   | ||| || |||| || |||||||| |||||||| | |||||||||||| |||||    
T  5267 acaagataattccctttctaacaacaaagccaagggatagacttttccaagtaaaaac-agataattccc-ttttaacagaatgagccaagggacagact 5364  T
Q  111 ccagagtacataa 123  Q
    ||| |||||||||    
T  5365 ccaaagtacataa 5377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 301149 - 301101
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagacctgcaaa 61  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  301149 acaagataattccctttctaacaacaaagccaagggatagacctacaaa 301101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 40412 - 40371
Alignment:
Q  14 acaagataattccctttctaa-aacaaagtcaagggatagac 54  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  40412 acaagataattccctttctaacaacaaagccaagggatagac 40371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University