View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_high_5 (Length: 554)
Name: NF12600_high_5
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 37380242 - 37380776
Alignment:
| Q |
1 |
tactgccatgaatgtgaaaatacgctttttgtattatcaacactgcagtatacgaatttgtaatttgtcaccgtaggttttcttggcaaattgaaggaag |
100 |
Q |
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| T |
37380242 |
tactgccatgaatgtgaaaatacgctttttgtattatcaacactgcagtatacgaatttgtaatttgtcaccgtaggttttcttggcaaattgaaggaag |
37380341 |
T |
|
| Q |
101 |
aacaacatgaagtccaaaccaatagaagagatgcacaagtatgggatgaatcaagaagaaaacatgtaagaagcaaatgctgtgaagtttcttcttatga |
200 |
Q |
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| T |
37380342 |
aacaacatgaagtccaaaccaatagaagagatgcacaagtatgggatgaatcaagaagaaaacatgtaagaagcaaatgctgtgaagtttcttcttatga |
37380441 |
T |
|
| Q |
201 |
atatgcagaaacaatacgaaatttccttttaatcaattatgttttgttggtaatcaaaggtcgcttgctaagcgaaaattaaaaccttcataagtgcaaa |
300 |
Q |
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| T |
37380442 |
atatgcagaaacaatacgaaatttccttttaatcaattatgttttgttggtaatcaaaggtcgcttgctaagcgaaaattaaaaccttcat-agtgcaaa |
37380540 |
T |
|
| Q |
301 |
acaattctaataacttttgaagtgcaaactaggtcagtaggcatgttgtagaggtgtttgttgatttaattatatttgttttcacatggnnnnnnnggta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37380541 |
acaattctaataacttttgaagtgcaaactaggtcagtaggcatgttgtagaggtgtttgttgatttaattatatttgttttcacatgg-aaaaaaggta |
37380639 |
T |
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| Q |
401 |
tctaattcaatgatcaagatcaacatagctgtttgtgggtttaattatatttgtttgaag-annnnnnnnnatatctaattcaatatttagttttcttag |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37380640 |
tctaattcaatgatcaagatcaacatagctgtttgtgggtttaattatatttgtttgaagtttttttttttatatctaattcaatatttagttttcttag |
37380739 |
T |
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| Q |
500 |
tttgtttttcagagtatcatttacgctcacttgcact |
536 |
Q |
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| T |
37380740 |
tttgtttttcagagtatcatttgcgctcacttgcact |
37380776 |
T |
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