View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_high_8 (Length: 445)
Name: NF12600_high_8
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 148 - 303
Target Start/End: Original strand, 10917137 - 10917292
Alignment:
| Q |
148 |
cgaactggagtaaagtcgaagcacggtcgaggtgttgtggaacgtaaaattgaatgatcatacaagctctcgatactagctacactgctcttgattacct |
247 |
Q |
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| T |
10917137 |
cgaactggagtaaagtcgaagcgcggtcgaggtgttgtggaacgtaaaattgaatgatcatacaagctctcgatgctagctacactgctcttgattacct |
10917236 |
T |
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| Q |
248 |
acttgtgatgtagtctcttattacttgaactaatctattggatatcttttaaggaa |
303 |
Q |
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| T |
10917237 |
acttgtgatgtagtctcttattacttcgactaatctattggatatcttttaaggaa |
10917292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 3349232 - 3349183
Alignment:
| Q |
301 |
gaacagaaatgataaacaaacacacaataactaacacaaatacgacacca |
350 |
Q |
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| T |
3349232 |
gaacaggaatgataaacagacacaaaacaacaaacacaaatacgacacca |
3349183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 4149194 - 4149150
Alignment:
| Q |
303 |
acagaaatgataaacaaacacacaataactaacacaaatacgaca |
347 |
Q |
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| T |
4149194 |
acagaaatgataaacaaacacaaaaaatcaaacacaaatacgaca |
4149150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 54703288 - 54703222
Alignment:
| Q |
302 |
aacagaaatgataaacaaacacacaataactaacacaaatacgacaccaccgtatcaatatacggta |
368 |
Q |
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| T |
54703288 |
aacagaaatgataaacaaacacacaataactaacacaaatacgacaccactgtatcaatatacggta |
54703222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 39609443 - 39609398
Alignment:
| Q |
304 |
cagaaatgataaacaaacacacaataactaacacaaatacgacacca |
350 |
Q |
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| T |
39609443 |
cagaaatgataaacaaacaca-aaaaacaaacacaaatacgacacca |
39609398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 7227224 - 7227179
Alignment:
| Q |
148 |
cgaactggagtaaagtcgaagcacggtcgaggtgttgtggaacgta |
193 |
Q |
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| T |
7227224 |
cgaaccggagtaaagtcgaagcatggtcgaggtgctgtgggacgta |
7227179 |
T |
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