View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12600_low_1 (Length: 1133)

Name: NF12600_low_1
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12600_low_1
NF12600_low_1
[»] chr4 (11 HSPs)
chr4 (18-1123)||(13259686-13260787)
chr4 (267-804)||(13254845-13255370)
chr4 (807-1123)||(13256016-13256321)
chr4 (21-231)||(13254077-13254288)
chr4 (700-808)||(13297872-13297980)
chr4 (438-524)||(13297617-13297703)
chr4 (996-1066)||(13298548-13298618)
chr4 (351-404)||(13297516-13297569)
chr4 (996-1064)||(34581598-34581666)
chr4 (1009-1066)||(682002-682059)
chr4 (238-271)||(13254583-13254616)
[»] chr7 (4 HSPs)
chr7 (1009-1097)||(23117300-23117388)
chr7 (996-1106)||(2219458-2219567)
chr7 (1042-1106)||(28989936-28990000)
chr7 (1019-1098)||(48517385-48517464)
[»] chr1 (3 HSPs)
chr1 (1009-1065)||(6025943-6025999)
chr1 (1010-1066)||(43391506-43391562)
chr1 (1017-1096)||(52659433-52659512)
[»] chr5 (2 HSPs)
chr5 (1009-1110)||(40213817-40213918)
chr5 (1009-1058)||(40990989-40991038)
[»] chr2 (2 HSPs)
chr2 (1010-1110)||(9645262-9645362)
chr2 (1053-1106)||(1813545-1813598)
[»] chr6 (4 HSPs)
chr6 (1011-1097)||(9075206-9075292)
chr6 (996-1037)||(264574-264615)
chr6 (996-1046)||(26373102-26373152)
chr6 (1009-1095)||(9163788-9163878)
[»] chr8 (1 HSPs)
chr8 (1045-1103)||(7864550-7864608)


Alignment Details
Target: chr4 (Bit Score: 1001; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 1001; E-Value: 0
Query Start/End: Original strand, 18 - 1123
Target Start/End: Original strand, 13259686 - 13260787
Alignment:
Q  18 catcagtcaaattgatcttaaggttaagaagcttgagttaacattcacagagatgcgcatgtggtgcttttggataatttaggattcacatgtggcaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13259686 catcagtcaaattgatcttaaggttaagaagcttgagttaacattcacagagatgcgcatgtggtgcttttggatcatttaggattcacatgtggcaaga 13259785  T
Q  118 ttttacacatcttcgccaagtaaggcattgtttctcctnnnnnnnnnnnntctcataattccttctctccccatttacttatcttcaataataaaaaatg 217  Q
    ||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13259786 ttttacacatcttcgccaagtaaggcattgtttctcctaaaaataaaaaatctcataattccttctctccccatttacttatcttcaataataaaaaatg 13259885  T
Q  218 aaaccattacttaaaaacagagattggtatatgacacatcatggagatgaaattaaaagtaacacattttgatttcaataaaaaatagtggaaccaaaga 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13259886 aaaccattacttaagaacagagattggtatatgacacatcatggagatgaaattaaaagtaacacattttgatttcaataaaaaatagtggaaccaaaga 13259985  T
Q  318 gatctgagtagaatatgcagttccattctctgatctgtgattgacaacactagaagtatgtttaagaaccaatagaacatgcacaaataaatatataaat 417  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13259986 gatctgagtaaaatatgcagttccattctctgatctgtgattgacaacactagaagtatgtttaagaaccaatagaacatgcacaaataaatatataaat 13260085  T
Q  418 tttctgttcctatatgacttcattcagccttctcaaccgcttcggttttgcttttttcctcgttttattattcgaactagttgccacctctacagttttg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13260086 tttctgttcctatatgacttcattcagccttctcaaccgcttcggttttgcttttttcctcgttttattattcgaactagttgccacctctacagttttg 13260185  T
Q  518 tccgcttcnnnnnnnncagtcacctggggcccattagagggtgctacactttttcacaatcccaaaagctggttttttatttacgtaatcttaggggcat 617  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13260186 tccgcttcttttttttcagtcacctggggcccattagagggtgctacactttttcgcaatcccaaaagctggttttttatttacgtaatcttaggggcat 13260285  T
Q  618 atcttaactttcggcagtagatctgatacctcttttgtatgatcatgatttcttaggtatttctcttacatctagcctttttgccagtaatggcttctaa 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13260286 atcttaactttcggcagtagatctgatacctcttttgtatgatcatgatttcttaggtatttctcttacatctagcctttttgccagtaatggcttctaa 13260385  T
Q  718 cgaactattagatgaactcataggagttctaaaattttgaaaaagagacaattcatcaaagttcaatttctcaactagaaaaccataccaggctttgtac 817  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13260386 cgaactattagatgaactcataggagttatcaaattttgaaaaagagacaattcatcaaagttcaatttctcaactagaaaaccataccaggctttgtac 13260485  T
Q  818 atgttcaaaaacagagtaggagttgatgaagtttgatctaaatccatacacatgctaacaaaagaaaatatgattatttagtttattttggtctttatgg 917  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13260486 atgttcaaaaacagagtaggagttgatgaagtttgatctaaatccatacacatgctaacaaaagaaaatatgattatttagtttattttggtctttatgg 13260585  T
Q  918 agatatggagaaatagttgggctaaacatgattgttgttaaatagtggctatagctgcgctgtattgtgtctgtagtgtgttctgtggtaggctatttag 1017  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  13260586 agatatggagaaatagttgggctaaacatgattgttgttaaatagtggctatagctgcgctgtattgtgtctgtagtgtgttctgtggtag----tttag 13260681  T
Q  1018 tacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttccacgatctgcgattaattaca 1117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13260682 tacaaaatgctgtcaaatagtgattataacagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttccacgatctgcgattaattaca 13260781  T
Q  1118 gtgaac 1123  Q
    ||||||    
T  13260782 gtgaac 13260787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 267 - 804
Target Start/End: Original strand, 13254845 - 13255370
Alignment:
Q  267 aaattaaaagtaacacattttgatttcaataaaaaatagtggaaccaaagagatctgagtagaatatgcagttccattctctgatctgtgattgacaaca 366  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||||||||| |  |||| ||||||||||||||||||| |  |||||||||||||||    
T  13254845 aaatttaaagtaacacattttgatttcaataaaaaag-gtggaaccaaagagaacaaagtaaaatatgcagttccattctccgtcctgtgattgacaaca 13254943  T
Q  367 ctagaagtatgtttaagaaccaatagaacatgcacaaataaatatataaattttctgttcctatatgacttcattcagccttctcaaccgcttcggtttt 466  Q
      || ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| ||||| |||  ||||||||||||||||||||| ||||||    
T  13254944 tcagtagtatgtttaagaaccaatagaacatgcacaaagaaatatataaatttgttgttcttatatcactaaattcagccttctcaaccgcttgggtttt 13255043  T
Q  467 gcttttttcctcgttttattattcgaactagttgccacctctacagttttgtccgcttcnnnnnnnnc-agtcacctggggcccattagagggtgctaca 565  Q
    |||||||||| |||||||||||  ||||||||||||          |||||||| |||         | ||||||||||||||||||||||||| | |||    
T  13255044 gcttttttccccgttttattatatgaactagttgcc----------ttttgtccacttattttttttccagtcacctggggcccattagagggtcc-aca 13255132  T
Q  566 ctttttcacaatcccaaaagctggttttttatttacgtaatcttaggggcatatcttaactttcggcagtagatctgatacctcttttgtatgatcatga 665  Q
    ||||| |||||||||||  |||||||||||||| | | |||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  13255133 cttttgcacaatcccaagtgctggttttttatt-atggaatcatagtggcatatcttaacttttggcaatagatctgatacctcttttgtatgatcatga 13255231  T
Q  666 tttcttaggtatttctcttacatctagcctttttgccagtaatggcttctaacgaactattagatgaactcataggagttctaaaattttgaaaaagaga 765  Q
    |||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||  |||||| ||||||| | |||||||||||||  ||    
T  13255232 tttcttgggtatttctcttacatctagcctttttgccagaaattgcttctaacaaactattagaataactcaaaggagttatcaaattttgaaaaaagga 13255331  T
Q  766 caattcatcaaagttcaatttctcaactagaaaaccata 804  Q
    |||||||||||||  |||||||| |||||||||||||||    
T  13255332 caattcatcaaagcacaatttcttaactagaaaaccata 13255370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 807 - 1123
Target Start/End: Original strand, 13256016 - 13256321
Alignment:
Q  807 aggctttgtacatgttcaaaaacagagtaggagttgatgaagtttgatctaaatccatacacatgctaacaaaagaaaatatgattatttagtttatttt 906  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  13256016 aggctttgtacatgttcaaaaacaaagtaggagttgatgaagtttgatctaaatccatacacgtgcaaacaaaagaaaatatgattattttgtttatttt 13256115  T
Q  907 ggtctttatggagatatggagaaatagttgggctaaacatgattgttgttaaatagtggctatagctgcgctgtattgtgtctgtagtgtgttctgtggt 1006  Q
    | |||||||||||||||||||||||||||||||||||||| | |||||||||| || ||||||||| |||           ||||||||||||| |||||    
T  13256116 gttctttatggagatatggagaaatagttgggctaaacatcagtgttgttaaacagcggctatagccgcg-----------ctgtagtgtgttccgtggt 13256204  T
Q  1007 aggctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttccacgatctgc 1106  Q
    | |||||| ||||||||||| || ||||||||||||||||| | | ||||||||  ||||||||| ||||||||||| |||||||||||||||||| |||    
T  13256205 acgctattcagtacaaaatgttgccaaatagtgattatagcggcgttatagcacaattgcgttacaaaatttgaacagaccattattttccacgatatgc 13256304  T
Q  1107 gattaattacagtgaac 1123  Q
     |||||| ||| |||||    
T  13256305 aattaataacactgaac 13256321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 13254077 - 13254288
Alignment:
Q  21 cagtcaaattgatcttaaggttaagaagcttgagttaacattcacagagatgcgcatgtggtgcttttgga-taatttaggattcacatgtggcaagatt 119  Q
    ||||||||| | |||| ||||||||||||||||||||| | || ||||||||| |||||||||||||| || | |||||||||||| |||||||||||||    
T  13254077 cagtcaaatgggtctttaggttaagaagcttgagttaatactcgcagagatgctcatgtggtgcttttagaatcatttaggattcatatgtggcaagatt 13254176  T
Q  120 ttacacatcttcgccaagtaaggcattgtttctcctnnnnnnnnnnnntctcataattccttctctccccatttacttatcttcaataataaaaaatgaa 219  Q
    |||||||||||| ||||||||||| |||||||||||            |||||||||||||||| |||| |||||| ||||||  ||| |||||||||||    
T  13254177 ttacacatcttcaccaagtaaggcgttgtttctcctaaaaataaaaaatctcataattccttctttcccaatttacatatctttgatattaaaaaatgaa 13254276  T
Q  220 accattacttaa 231  Q
    ||| | ||||||    
T  13254277 accgtaacttaa 13254288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 700 - 808
Target Start/End: Original strand, 13297872 - 13297980
Alignment:
Q  700 gccagtaatggcttctaacgaactattagatgaactcataggagttctaaaattttgaaaaagagacaattcatcaaagttcaatttctcaactagaaaa 799  Q
    |||||| |||||||| ||| |||||| ||| ||||||| ||||||| | |||||||||||||| || ||||||||||||  |||||||||  ||||||||    
T  13297872 gccagtgatggcttcaaacaaactatcagaagaactcaaaggagttatcaaattttgaaaaagggataattcatcaaagcgcaatttctctcctagaaaa 13297971  T
Q  800 ccataccag 808  Q
    |||||||||    
T  13297972 ccataccag 13297980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 438 - 524
Target Start/End: Original strand, 13297617 - 13297703
Alignment:
Q  438 cattcagccttctcaaccgcttcggttttgcttttttcctcgttttattattcgaactagttgccacctctacagttttgtccgctt 524  Q
    ||||||||||||||||||| || |||||||||||| ||  | |||||||||||||||||||||||| || ||||||||||| |||||    
T  13297617 cattcagccttctcaaccgtttgggttttgcttttatctccattttattattcgaactagttgccatctgtacagttttgttcgctt 13297703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 996 - 1066
Target Start/End: Original strand, 13298548 - 13298618
Alignment:
Q  996 tgttctgtggtaggctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgc 1066  Q
    ||||||||| || ||||||||||||||| |||||||||||||||| ||||   |  |||||||||||||||    
T  13298548 tgttctgtgatatgctatttagtacaaagtgctgtcaaatagtgactataatggcactatagcactgttgc 13298618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 13297516 - 13297569
Alignment:
Q  351 tctgtgattgacaacactagaagtatgtttaagaaccaatagaacatgcacaaa 404  Q
    |||||||||||||||| ||  ||||||||||||||||||||| | |||||||||    
T  13297516 tctgtgattgacaacattattagtatgtttaagaaccaataggagatgcacaaa 13297569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 996 - 1064
Target Start/End: Original strand, 34581598 - 34581666
Alignment:
Q  996 tgttctgtggtaggctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgtt 1064  Q
    ||||| ||| || |||||||||||||||||| |||||||||| |  ||||| || ||||||||||||||    
T  34581598 tgttccgtgatacgctatttagtacaaaatgttgtcaaatagcggctatagtagcgctatagcactgtt 34581666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1009 - 1066
Target Start/End: Original strand, 682002 - 682059
Alignment:
Q  1009 gctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgc 1066  Q
    |||| ||||||||| ||| |||||||||| | ||||||||||||||||| ||| ||||    
T  682002 gctagttagtacaacatgttgtcaaatagaggttatagcagtgctatagtactattgc 682059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 13254583 - 13254616
Alignment:
Q  238 agattggtatatgacacatcatggagatgaaatt 271  Q
    ||||||||||||||||||||| ||||||||||||    
T  13254583 agattggtatatgacacatcagggagatgaaatt 13254616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1009 - 1097
Target Start/End: Complemental strand, 23117388 - 23117300
Alignment:
Q  1009 gctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttcc 1097  Q
    ||||||||| |||||||| ||| ||||||||  |||||||| |||||||||||||  |||  || ||||||||||||||| ||||||||    
T  23117388 gctatttagcacaaaatgttgtgaaatagtgggtatagcagcgctatagcactgtcacgtagcggaatttgaacaaaccactattttcc 23117300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 996 - 1106
Target Start/End: Complemental strand, 2219567 - 2219458
Alignment:
Q  996 tgttctgtggtaggctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattatttt 1095  Q
    |||||| || || |||||||||||||||||  |||||||||| | ||||| | ||||||||||| ||||| || ||  |||||||||||| || ||||||    
T  2219567 tgttctctgatatgctatttagtacaaaatattgtcaaatagcggttataacggtgctatagcattgttg-gtaacagaatttgaacaaatcactatttt 2219469  T
Q  1096 ccacgatctgc 1106  Q
    |||||| ||||    
T  2219468 ccacgacctgc 2219458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1042 - 1106
Target Start/End: Complemental strand, 28990000 - 28989936
Alignment:
Q  1042 tatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttccacgatctgc 1106  Q
    ||||||||| |||||||| ||||||||  || |||||||||||| || ||||||||| |||||||    
T  28990000 tatagcagtactatagcagtgttgcgtagcggaatttgaacaaatcactattttccatgatctgc 28989936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1019 - 1098
Target Start/End: Complemental strand, 48517464 - 48517385
Alignment:
Q  1019 acaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttcca 1098  Q
    |||||||| | |||||||||| ||||||| | ||||||||| |||||  |  |||||||||||||||||  |||||||||    
T  48517464 acaaaatgttttcaaatagtggttatagcggcgctatagcaatgttgtatagcgaaatttgaacaaaccgctattttcca 48517385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1009 - 1065
Target Start/End: Complemental strand, 6025999 - 6025943
Alignment:
Q  1009 gctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttg 1065  Q
    |||||||||||||||||| ||||||||||||  |||||||| |||||||||||||||    
T  6025999 gctatttagtacaaaatgttgtcaaatagtggctatagcagcgctatagcactgttg 6025943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1010 - 1066
Target Start/End: Complemental strand, 43391562 - 43391506
Alignment:
Q  1010 ctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgc 1066  Q
    ||||||||||||||||| |||||||| | |  ||||||| |||||||||||||||||    
T  43391562 ctatttagtacaaaatgttgtcaaatggcggctatagcattgctatagcactgttgc 43391506  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1017 - 1096
Target Start/End: Original strand, 52659433 - 52659512
Alignment:
Q  1017 gtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttc 1096  Q
    |||||||||| |||||||||||   ||||    ||||||| ||||||||||||||| ||||||||||||||  |||||||    
T  52659433 gtacaaaatgttgtcaaatagtagctataatgttgctataacactgttgcgttacggaatttgaacaaaccgctattttc 52659512  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1009 - 1110
Target Start/End: Complemental strand, 40213918 - 40213817
Alignment:
Q  1009 gctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttccacgatctgcga 1108  Q
    ||||| |||||||||||| |||||||| ||   ||||   ||||||||||||||||||||  | |||||| ||||||||| |||||||||| || |||||    
T  40213918 gctatgtagtacaaaatgttgtcaaatggtagctatattggtgctatagcactgttgcgtagcaaaatttaaacaaaccactattttccacaatatgcga 40213819  T
Q  1109 tt 1110  Q
    ||    
T  40213818 tt 40213817  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1009 - 1058
Target Start/End: Original strand, 40990989 - 40991038
Alignment:
Q  1009 gctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagc 1058  Q
    |||||||||||||||||| ||||||||||||  |||||  ||||||||||    
T  40990989 gctatttagtacaaaatgttgtcaaatagtgggtatagtggtgctatagc 40991038  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1010 - 1110
Target Start/End: Complemental strand, 9645362 - 9645262
Alignment:
Q  1010 ctatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttccacgatctgcgat 1109  Q
    |||||||||| |||| |  ||||||||  | ||||||||||| ||||||| ||||||||    |||| ||||||||||| ||||||| ||||||||||||    
T  9645362 ctatttagtaaaaaaagaagtcaaataacggttatagcagtgatatagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgcgat 9645263  T
Q  1110 t 1110  Q
    |    
T  9645262 t 9645262  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1053 - 1106
Target Start/End: Original strand, 1813545 - 1813598
Alignment:
Q  1053 tatagcactgttgcgttacgaaatttgaacaaaccattattttccacgatctgc 1106  Q
    ||||||||||||| ||  || ||||||||||||||||||||||||  |||||||    
T  1813545 tatagcactgttgtgtagcggaatttgaacaaaccattattttccgtgatctgc 1813598  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1011 - 1097
Target Start/End: Original strand, 9075206 - 9075292
Alignment:
Q  1011 tatttagtacaaaatgctgtcaaatagtgattatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttcc 1097  Q
    |||| ||||||||||| |||||||||| | ||||||| | |||||||||||||||  | ||| ||| ||||||||||| | ||||||    
T  9075206 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtataacggaatgtgaacaaaccactgttttcc 9075292  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 996 - 1037
Target Start/End: Original strand, 264574 - 264615
Alignment:
Q  996 tgttctgtggtaggctatttagtacaaaatgctgtcaaatag 1037  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  264574 tgttctgtggtaggctatttagtacaaagtgttgtcaaatag 264615  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 996 - 1046
Target Start/End: Original strand, 26373102 - 26373152
Alignment:
Q  996 tgttctgtggtaggctatttagtacaaaatgctgtcaaatagtgattatag 1046  Q
    ||||||||| || ||||||||||||||| || |||||||||||| ||||||    
T  26373102 tgttctgtgatacgctatttagtacaaagtgttgtcaaatagtggttatag 26373152  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1009 - 1095
Target Start/End: Original strand, 9163788 - 9163878
Alignment:
Q  1009 gctatttagtacaaaatgctgtcaaatagtgat----tatagcagtgctatagcactgttgcgttacgaaatttgaacaaaccattatttt 1095  Q
    |||||||||||||||||| |||||||||||| |    ||||||||  |||||| ||||||| || | ||  ||||||||||||| ||||||    
T  9163788 gctatttagtacaaaatgttgtcaaatagtgtttatatatagcagctctatagtactgttgtgtaatgagttttgaacaaaccactatttt 9163878  T

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Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1045 - 1103
Target Start/End: Original strand, 7864550 - 7864608
Alignment:
Q  1045 agcagtgctatagcactgttgcgttacgaaatttgaacaaaccattattttccacgatc 1103  Q
    ||||| |||||| ||||||||||| ||  ||||| |||||||||| |||||||||||||    
T  7864550 agcagcgctatatcactgttgcgtaacagaattttaacaaaccatgattttccacgatc 7864608  T

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