View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_10 (Length: 549)
Name: NF12600_low_10
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_10 |
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| [»] chr7 (12 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 190 - 549
Target Start/End: Complemental strand, 8481283 - 8480931
Alignment:
| Q |
190 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaacaaa |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8481283 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaa-aaa |
8481185 |
T |
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| Q |
290 |
aatataactagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtatttatcattttaatctggctcaatatctt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
8481184 |
aatataactagaacaacatgatgttatttggttggtaattatgtgaacatcaaacacatgatataattgtatttatcattttaatccggctcaatatctt |
8481085 |
T |
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| Q |
390 |
atcatgcttctaacaatagcatgctgaacaaagtttcttttatgatcacaacttcttacaggccattcaactttaatcttaactttgactcatcacttgt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8481084 |
atcatgcttctaacaatagcatgctgaacaaagtttcttttatgatcacaacttctaacaggccattcaactttaatcttaac--tgactcatcacttgt |
8480987 |
T |
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| Q |
490 |
ttcaattaaatcttctggtttgggtggacggactgtgacaaatgcagtggccaaaataac |
549 |
Q |
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| T |
8480986 |
ttcaattaaatcttctggtttgggt----ggactgtgacaaatgcagtggccaaaataac |
8480931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 190 - 549
Target Start/End: Original strand, 8349834 - 8350182
Alignment:
| Q |
190 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaacaaa |
289 |
Q |
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| T |
8349834 |
gacgttttgtatctatctaattatgatacatattccatcatttaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaa-aaa |
8349932 |
T |
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| Q |
290 |
aatataactagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatga-----tatgattgtatttatcattttaatctggctcaat |
384 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
8349933 |
aatataactagaaca-----------tttggttggtaattctgtgagcatcaaacacatgatatgatatgattgtatttatcattttaatccggctcaat |
8350021 |
T |
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| Q |
385 |
atcttatcatgcttctaacaatagcatgctgaacaaagtttcttttatgatcacaacttcttacaggccattcaactttaatcttaactttgactcatca |
484 |
Q |
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| T |
8350022 |
atcttatcatgcttctaacaatagcatgctgaacaaagtttcttttatgatcacaacttctaactggccattcaactttaatcttaactttgactcatca |
8350121 |
T |
|
| Q |
485 |
cttgtttcaattaaatcttctggtttgggtggacggactgtgacaaatgcagtggccaaaataac |
549 |
Q |
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| T |
8350122 |
cttgtttcaattaaatcttctggtttgggt----ggactgtgacaaatgcagtggccaaaataac |
8350182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 8482797 - 8482678
Alignment:
| Q |
73 |
ttgatcaaaacatcatcataagtacaaagtatttccaatgttccagatcgccaccactagtctggaaagat-agtgagtttgttatgaacaacttttggg |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8482797 |
ttgatcaaaacatcatcataagtacaaagtatttccaatgttccagatcaccaccactagtctggaaagataagtgagtttgttatgaacaacttttggg |
8482698 |
T |
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| Q |
172 |
atgttcctaaatagaagaga |
191 |
Q |
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| T |
8482697 |
atgttcctaaatagaagaga |
8482678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 8355517 - 8355597
Alignment:
| Q |
111 |
tgttccagatcgccaccactagtctggaaagatagtgagtttgttatgaacaacttttgggatgttcctaaatagaagaga |
191 |
Q |
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| T |
8355517 |
tgttccagatcgccaccactagtctggaaagatagtgagtttgttatgaacaacttttgggatgttcctaaatagaagaga |
8355597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 190 - 391
Target Start/End: Original strand, 8450856 - 8451052
Alignment:
| Q |
190 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaacaaa |
289 |
Q |
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|||||||||||||||||||| ||| ||||||||| |||||||||||||| | ||||| ||||||||||||| ||||| ||| || ||||| ||| | |
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| T |
8450856 |
gacgttttgtatctatctaaatataatacatatttcatcatgtaattatcatgcatgtaccaaaaaatataatagaacaaatcatatttaaggaaa---a |
8450952 |
T |
|
| Q |
290 |
aatataactagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtatttatcattttaatctggctcaatatctt |
389 |
Q |
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| ||||| ||||||||||| |||||||||||||| | | |||||||||| ||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
8450953 |
agtataa-tagaacaacataatgttatttggttgttg-tcatgtgagcattaaacatatgatatgattgtatttattatttttatccggctcaatatctt |
8451050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 190 - 391
Target Start/End: Complemental strand, 8428581 - 8428385
Alignment:
| Q |
190 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaacaaa |
289 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||| |||||||||||||| | ||||| |||||| |||| | ||||| ||| || ||||| ||| | |
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| T |
8428581 |
gacgttttgtatctatctaaatataatacatatttcatcatgtaattatcatgcatgtaccaaaacatatgatagaacaaatcatatttaaggaaa---a |
8428485 |
T |
|
| Q |
290 |
aatataactagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtatttatcattttaatctggctcaatatctt |
389 |
Q |
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| ||||| ||||||||||| |||||||||||||| | | |||||||||| ||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
8428484 |
agtataa-tagaacaacataatgttatttggttgttg-tcatgtgagcattaaacatatgatatgattgtatttattatttttatccggctcaatatctt |
8428387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 8349408 - 8349464
Alignment:
| Q |
17 |
cctgtgggtttttaacaccgcaggattgatctttctcttcaaatgtgtgggacggtt |
73 |
Q |
| |
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| T |
8349408 |
cctgtgggtttgtaacaccgcaggattgatctttctcttcaaatgtgtgggacggtt |
8349464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 8355461 - 8355517
Alignment:
| Q |
17 |
cctgtgggtttttaacaccgcaggattgatctttctcttcaaatgtgtgggacggtt |
73 |
Q |
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| T |
8355461 |
cctgtgggtttgtaacaccgcaggattgatctttctcttcaaatgtgtgggacggtt |
8355517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 8447859 - 8447945
Alignment:
| Q |
230 |
tgtaattatgaggcatgagccaaaa--aatataacagaactaataatgtttaacaaaacaaaaatataactagaacaacatgatgtt |
314 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |||||||||||||| || ||| |||||||||| |||||||| || ||||| |
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| T |
8447859 |
tgtaattatgaggcatgagccaaaaaaaatataacataactaataatgttttaccaaaaaaaaatataattagaacaaaataatgtt |
8447945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 8408705 - 8408774
Alignment:
| Q |
298 |
tagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtatttatcat |
368 |
Q |
| |
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|||||||| || || ||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |
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| T |
8408705 |
tagaacaaaataatattatttggttggttattacgtgagcatcaaaca-atgatatgattgtatttatcat |
8408774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 8482881 - 8482829
Alignment:
| Q |
17 |
cctgtgggtttt-taacaccgcaggattgatctttctcttcaaatgtgtggga |
68 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
8482881 |
cctgtgggttttgtaataccgcaggattgatctttctcttcaaatgtgtggga |
8482829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 8437239 - 8437304
Alignment:
| Q |
299 |
agaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtattta |
364 |
Q |
| |
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||||||| || |||||||||||||||| || ||||||| |||||||| ||||||||||| |||||| |
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| T |
8437239 |
agaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttattta |
8437304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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