View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_11 (Length: 530)
Name: NF12600_low_11
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 48545721 - 48546222
Alignment:
| Q |
1 |
aaggatccttgcaatggtacctccatggacacgtgtttatagagttcagcgggatattccaatgcctttggtgacctctggggttgagaaagggaatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48545721 |
aaggatccttgcaatggtacctccatggacacgtgtttatagagttcagcgggatattccaatgcctttggtgacctctggggttgagaaagggaatcta |
48545820 |
T |
|
| Q |
101 |
agggagttagcattagctcgaatggaagacttgggtttaaaatgtcgtgatgttcgcaccagagaagctggaatccaggtaattatctagaaccaatctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48545821 |
agggagttagcattagctcgaatggaagacttgggtttaaaatgtcgtgatgttcgcaccagagaagctggaatccaggtaattatctagaaccaatctt |
48545920 |
T |
|
| Q |
201 |
gtctggaaattttatttaactaagatttttaaatcttgacacactttgttaaccagtattattttggagcaccaaccgacattctgtgtttctttgtagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48545921 |
gtctggaaattttatttaactaagatttttaaatcttgacacactttgttaaccagtattattttggagcaccaaccgacattctgtgtttctttgtagg |
48546020 |
T |
|
| Q |
301 |
atattcatcaccaaattaaaccagaagaggtggaacttgttcgtcgtgattatatggcaaatgaaggttgggaaacatttttgtcatatgaagatacacg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48546021 |
atattcatcaccaaattaaaccagaagaggtggaacttgttcgtcgtgattatatggcaaatgaaggttgggaaacatttttgtcatacgaagatacacg |
48546120 |
T |
|
| Q |
401 |
gcaggtgattttaccttctttcctcagcctctcttattagtgcctgtccttttgtctatcatcattttctactttgagttgtaacgtgtgagtctagttt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48546121 |
gcaggtgattttaccttctttcctcagcctctcttaatagtgcctgtccttttgtctatcatcattttctactttgagttgtaacgtgtgagtctagttt |
48546220 |
T |
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| Q |
501 |
gt |
502 |
Q |
| |
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|| |
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| T |
48546221 |
gt |
48546222 |
T |
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