View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_13 (Length: 449)
Name: NF12600_low_13
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 39504238 - 39504595
Alignment:
| Q |
14 |
agaaatacataggtgcactgaaaacacatcgaagcatcttcaaaaatagtttttgtgcagctgcgagaccaaatgtagcgactagaacagcccttacaaa |
113 |
Q |
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| T |
39504238 |
agaaatacataggtgcactgaaaacacatcgaagcatcttcaaaaatagtttttgtgcagctgcgagaccaaatgtagcgactagaacagcccttacaaa |
39504337 |
T |
|
| Q |
114 |
tataaacaatgaacttccgaaagcaagggccatgtaaacaagaagaagaatcatgggttttactttgggttggtctccttctgtttgagggttagcccac |
213 |
Q |
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| T |
39504338 |
tataaacaatgaacttccgaaagcaagggccatgtaaacaagaagaagaatcatgggttttactttgggctggtctccttctgtttgagggttagcccac |
39504437 |
T |
|
| Q |
214 |
gccatccaccaattactagcaatctgaaggaactgaaataacgcttgtgcgataataatgagtggaatcaataaacctttatatgccgctgccatgtatg |
313 |
Q |
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| T |
39504438 |
gccatccaccaattactagcaatctgaaggaactgaaataacgcttgtgcgatgataatgagtggaatcaataaacctttatatgccgctgccatgtatg |
39504537 |
T |
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| Q |
314 |
aaaggtacaccttcatgctgactctgcctctaaccctctcttcttcctgaacaagctg |
371 |
Q |
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| T |
39504538 |
aaaggtacaccttcatgctgactctgcctctaaccctctcttcttcctgaacaagctg |
39504595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 45 - 371
Target Start/End: Complemental strand, 30063386 - 30063060
Alignment:
| Q |
45 |
aagcatcttcaaaaatagtttttgtgcagctgcgagaccaaatgtagcgactagaacagcccttacaaatataaacaatgaacttccgaaagcaagggcc |
144 |
Q |
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| T |
30063386 |
aagcatgttaaaaaacagcttctgtgcagctgctagaccaaatgtagccacgagaacggccctaacaaatatgaagcatgagctgccaaaggcaagggcc |
30063287 |
T |
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| Q |
145 |
atgtaaacaagaagaagaatcatgggttttactttgggttggtctccttctgtttgagggttagcccacgccatccaccaattactagcaatctgaagga |
244 |
Q |
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|||||||||||||||||| || |||| |||||||||| | |||||||||||||||||| || ||||| |||||||||||||| || ||||||||||||| |
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| T |
30063286 |
atgtaaacaagaagaagagtcgtgggagttactttgggctcgtctccttctgtttgaggattcgcccaagccatccaccaattgctggcaatctgaagga |
30063187 |
T |
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| Q |
245 |
actgaaataacgcttgtgcgataataatgagtggaatcaataaacctttatatgccgctgccatgtatgaaaggtacaccttcatgctgactctgcctct |
344 |
Q |
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|||||||||| | |||||| || || ||||| ||||||| ||| |||||||| || ||||||||||| | ||||||||||||||||||||||| ||||| |
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| T |
30063186 |
actgaaataatgtttgtgcaatgattatgaggggaatcagtaagcctttataggcggctgccatgtaggtcaggtacaccttcatgctgactctacctct |
30063087 |
T |
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| Q |
345 |
aaccctctcttcttcctgaacaagctg |
371 |
Q |
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||||||||| ||||| ||||||||||| |
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| T |
30063086 |
aaccctctcctcttcttgaacaagctg |
30063060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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