View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12600_low_15 (Length: 441)

Name: NF12600_low_15
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12600_low_15
NF12600_low_15
[»] chr3 (3 HSPs)
chr3 (5-182)||(44989526-44989703)
chr3 (237-271)||(44989495-44989529)
chr3 (304-412)||(54417046-54417153)
[»] chr5 (1 HSPs)
chr5 (305-412)||(16570521-16570627)
[»] chr8 (2 HSPs)
chr8 (304-410)||(26835618-26835723)
chr8 (319-410)||(13580397-13580487)
[»] chr4 (1 HSPs)
chr4 (304-405)||(36071581-36071681)
[»] chr2 (1 HSPs)
chr2 (304-410)||(40876949-40877054)
[»] chr6 (2 HSPs)
chr6 (358-410)||(9815749-9815801)
chr6 (314-410)||(12174320-12174415)
[»] chr1 (1 HSPs)
chr1 (358-410)||(8246797-8246849)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 44989703 - 44989526
Alignment:
Q  5 ttagataagatataattgcttgtatcttttatcgtgactacgacataaaccataacgtgacttaatttaaaagtagaatcgtattggattgaatgtacaa 104  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||    
T  44989703 ttagataagatataattgcttctatcttttatcttgactatgacataaaccataacgttacttaatttaaaaggataatcgtatttgattgaatgtacaa 44989604  T
Q  105 tatttctattctatatggtggaacacactttcagcactcgttacaagtttgggggagcaacagagcacctatacatga 182  Q
    | ||||||||||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  44989603 tttttctattctatatggtgttacacactttcagcactcgttacatgtttggggcagcaacagagcacctatacatga 44989526  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 44989529 - 44989495
Alignment:
Q  237 atgaatttgtaccctttaattatttgaaagtattc 271  Q
    |||||||||||||||||||||||||||||||||||    
T  44989529 atgaatttgtaccctttaattatttgaaagtattc 44989495  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 54417046 - 54417153
Alignment:
Q  304 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 403  Q
    |||||||| ||||| ||||||  ||||||   |||||||| | ||||||| ||||||  |||||  || ||||||| | |||||| ||||||||||||||    
T  54417046 ataatcaaaattctttaaaaacatattttcagtagaattaatcaaagtgaattaaaag-gaaatgtatctatatagcactaactaccaagtaaaaataat 54417144  T
Q  404 aaatttgat 412  Q
    || ||||||    
T  54417145 aattttgat 54417153  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 16570521 - 16570627
Alignment:
Q  305 taatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataata 404  Q
    |||||||  |||||||||||| ||||||| ||||||||| | ||||||| || ||||||||||  || ||||| |||  |||||  ||||||||||||||    
T  16570521 taatcaaagttctctaaaaatatatttttaatagaattaatcaaagtgaatt-aaaaagaaatatatctatatggtaccaactaataagtaaaaataata 16570619  T
Q  405 aatttgat 412  Q
    | ||||||    
T  16570620 attttgat 16570627  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 410
Target Start/End: Original strand, 26835618 - 26835723
Alignment:
Q  304 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 403  Q
    ||||||||  |||||||||||| ||||||  ||||||||| | ||||  | ||||||| |||||  |||||||| ||| ||||||| |||||||||||||    
T  26835618 ataatcaaagttctctaaaaatatattttcaatagaattaataaaagaaaattaaaaa-gaaatatatttatattgtactaactattaagtaaaaataat 26835716  T
Q  404 aaatttg 410  Q
    || ||||    
T  26835717 aattttg 26835723  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 410
Target Start/End: Original strand, 13580397 - 13580487
Alignment:
Q  319 taaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 410  Q
    ||||||| ||||||  ||||||||| | |||| || ||||||| |||||  ||||||||| || ||||||| ||||||||||||||| ||||    
T  13580397 taaaaatatattttcaatagaattaatcaaagcgaattaaaaa-gaaatatatttatataatactaactattaagtaaaaataataattttg 13580487  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 36071581 - 36071681
Alignment:
Q  304 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 403  Q
    ||||||||  |||||||||||| ||||||  || |||||| | ||||  | ||||||| |||||  || ||||||||| |||||||||||||||||||||    
T  36071581 ataatcaaagttctctaaaaatatattttcaattgaattaatcaaagaaaattaaaaa-gaaatatatctatatagtactaactatcaagtaaaaataat 36071679  T
Q  404 aa 405  Q
    ||    
T  36071680 aa 36071681  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 410
Target Start/End: Original strand, 40876949 - 40877054
Alignment:
Q  304 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 403  Q
    ||||||||| |||| ||||||| ||||||  ||||||||| |  ||   ||||||||| |||||  ||||||||| || |||||| ||||||||||||||    
T  40876949 ataatcaaggttctataaaaatatattttcaatagaattaatccaaacaagttaaaaa-gaaatatatttatataatactaactaccaagtaaaaataat 40877047  T
Q  404 aaatttg 410  Q
    || ||||    
T  40877048 aattttg 40877054  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 9815749 - 9815801
Alignment:
Q  358 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 410  Q
    ||||||||||  || ||||||||||||||||  ||||||||||||||| ||||    
T  9815749 aaaaagaaatatatctatatagtattaactactaagtaaaaataataattttg 9815801  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 410
Target Start/End: Complemental strand, 12174415 - 12174320
Alignment:
Q  314 ttctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 410  Q
    |||||||||||| ||||||| ||| ||||| | |||  || ||||||| |||||  || ||||||||| ||||||  ||||||||||||||| ||||    
T  12174415 ttctctaaaaatatatttttaatataattaatcaaaacgaattaaaaa-gaaatatatctatatagtactaactactaagtaaaaataataattttg 12174320  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 8246797 - 8246849
Alignment:
Q  358 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 410  Q
    ||||||||||  || ||||||||| ||||||| ||||||||||||||| ||||    
T  8246797 aaaaagaaatatatctatatagtactaactattaagtaaaaataataattttg 8246849  T

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