View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_16 (Length: 440)
Name: NF12600_low_16
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 25303940 - 25303651
Alignment:
| Q |
3 |
agaggtaaagtcaagaaagttataaaactggtgtctgataatggttatttggttatgagataggagcacctatgtgatgtagcaaagaattattttgatg |
102 |
Q |
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| T |
25303940 |
agaggtaaagtcaagaaagttacaaaactggtgtttgataatggttatttggttatgagataggagcacctatgtgatgtagcaaataattattttgatg |
25303841 |
T |
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| Q |
103 |
tggtttttgcggccaacaatggtaaccatacgcatgttcttgattttctaaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgatta |
202 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25303840 |
tggtttttgcagccaacaatggtaaccatacgcatgttcttgattttctaaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgatta |
25303741 |
T |
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| Q |
203 |
ctagaaaagagcgcaaacatgccctatttcaaatgcaacctgataagtccccaaggtctgatggatttaatcttgtgttctatcattatt |
292 |
Q |
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| T |
25303740 |
ctagaaaagagctcaaacatgccctatttcaaatgcaacctgataagtcctcgaggtctgatggatttaatcctgcgttctatcattatt |
25303651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 291 - 413
Target Start/End: Complemental strand, 25302624 - 25302502
Alignment:
| Q |
291 |
ttcctatattattagtatatatgtcctccataattccatggttcatgatataaaacggatgattaatacatattggtcgggtggaggtggaaataattga |
390 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| | |||||||||||||| ||||||||| ||||| |||| |||||||||| ||||||||||| |
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| T |
25302624 |
ttcctatattatgagtatatatgacctccataattccattggtcatgatataaaacagatgattaacacatactggtggggtggaggttgaaataattga |
25302525 |
T |
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| Q |
391 |
gggattaaatggatgacgtggga |
413 |
Q |
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| T |
25302524 |
gggattaaatggatgacgtggga |
25302502 |
T |
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