View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_17 (Length: 436)
Name: NF12600_low_17
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 47918599 - 47918181
Alignment:
| Q |
1 |
tcatttaggataattctggaaactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaatgttctgc |
100 |
Q |
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| T |
47918599 |
tcatttaggataattctggaaactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaaagttctgc |
47918500 |
T |
|
| Q |
101 |
atcattggttcagtggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataat |
200 |
Q |
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| T |
47918499 |
atcattggttcaatggggtggacaagtgtttagttatgaggtcaa---aaaaactcctcacactggaacacaaatgggtagtggagaagaagcatataat |
47918403 |
T |
|
| Q |
201 |
aaatataagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctg |
300 |
Q |
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| T |
47918402 |
aaatttggggttgcatgttacatgggtggtgtgagaatcaaagataattcgcaagcacttaagtacccatcatttgtaagtacacatgctatagaaccat |
47918303 |
T |
|
| Q |
301 |
agtgttacagtgccctaaatattgctccatatggaaaagaccctgtattctattttggaggtgctggacgaaggcctcctcattgtccttgaacccatat |
400 |
Q |
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| T |
47918302 |
attgttacagtgccttcaatgatgctccatatggaaaagatcctgtattctattttggaggtgctggacgaaggcctcctcattgtccttgaacccatat |
47918203 |
T |
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| Q |
401 |
atgtattgtggatgtggttgat |
422 |
Q |
| |
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| T |
47918202 |
atgtattgtggatgtggttgat |
47918181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 107 - 394
Target Start/End: Complemental strand, 47909330 - 47909043
Alignment:
| Q |
107 |
ggttcagtggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatat |
206 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47909330 |
ggttcaatggggtggacaagtatttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatat |
47909231 |
T |
|
| Q |
207 |
aagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgtt |
306 |
Q |
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| T |
47909230 |
aagcacgcatgctatatgggcgcagtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgtt |
47909131 |
T |
|
| Q |
307 |
acagtgccctaaatattgctccatatggaaaagaccctgtattctattttggaggtgctggacgaaggcctcctcattgtccttgaac |
394 |
Q |
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| T |
47909130 |
acagtgccctaaatattgctccatatggaaaagaccctgtgttcttctttggaggggccggacgacaacctcgttattgtccttgaac |
47909043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 3 - 368
Target Start/End: Complemental strand, 47928362 - 47927997
Alignment:
| Q |
3 |
atttaggataattctggaaactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaatgttctgcat |
102 |
Q |
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| T |
47928362 |
atttaggataatgcccaaaactggtggtttaaagtgaagaataacatccctgtaggttattggccagcagagttattaggtaatttaagacacagtgcaa |
47928263 |
T |
|
| Q |
103 |
cattggttcagtggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataa |
202 |
Q |
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| T |
47928262 |
cattgattcaatggggtggacaagtgtttagttatgaggtcaaaacaaaacctcctcacacaggaacacagatgggtagtggagatgcagcaagtggtcg |
47928163 |
T |
|
| Q |
203 |
atataagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgag |
302 |
Q |
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| T |
47928162 |
atttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgctgcagaaccatat |
47928063 |
T |
|
| Q |
303 |
tgttacagtgccctaaatattgctccatatggaaaagaccctgtattctattttggaggtgctgga |
368 |
Q |
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| T |
47928062 |
tgttacagtgccctcaatgacgctccatatggaaaagatcctgtattctactttggaggagctgga |
47927997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 394
Target Start/End: Complemental strand, 47946920 - 47946547
Alignment:
| Q |
21 |
aactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaatgttctgcatcattggttcagtggggtg |
120 |
Q |
| |
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| T |
47946920 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
47946821 |
T |
|
| Q |
121 |
gacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatataagcacgcatgcta |
220 |
Q |
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| T |
47946820 |
gacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagcagcaagtggtcgatttgggttcgcatgtta |
47946721 |
T |
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| Q |
221 |
tatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaat |
320 |
Q |
| |
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||| |||||||||||| ||||| ||| || |||| ||||| |||||||| |||| ||| |||| | ||| ||| | |||||||||||||| || |
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| T |
47946720 |
catgacaaatgtgagaattaaggattattcagaaactctcaagtatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaac |
47946621 |
T |
|
| Q |
321 |
attgctccatatggaaaagaccctgtattctattttggaggtgctggacgaaggcctcctcattgtccttgaac |
394 |
Q |
| |
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| T |
47946620 |
gatgttcaatatggaaaagatcctgtcttcttttttggaggacctgggcgaagacctccatattgtccttgaac |
47946547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 47935701 - 47935605
Alignment:
| Q |
98 |
tgcatcattggttcagtggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagca |
194 |
Q |
| |
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|||| |||||||||| ||||| |||||||||||||||||| ||| ||||| | |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
47935701 |
tgcaacattggttcaatggggaggacaagtgtttagttatcaggtcaaaactacccctcctcacacaggaacacagatgggtagtggagaagaagca |
47935605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 47935496 - 47935438
Alignment:
| Q |
303 |
tgttacagtgccctaaatattgctccatatggaaaagaccctgtattctattttggagg |
361 |
Q |
| |
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| T |
47935496 |
tgttacagtgccctcaatgaagctccatatggacaagatcctgtattttattttggagg |
47935438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 47909417 - 47909369
Alignment:
| Q |
20 |
aaactggtggcttaaagtgaagaataacattcctgtaggttattggcca |
68 |
Q |
| |
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|||||||||||||||| | |||||||| || || ||||||||||||||| |
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| T |
47909417 |
aaactggtggcttaaaattaagaataatataccagtaggttattggcca |
47909369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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