View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_18 (Length: 424)
Name: NF12600_low_18
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 42219514 - 42219621
Alignment:
| Q |
305 |
ttctgcataatatcttcagcaccaaacttagtacccttctccttatcagcggcagcacgtcccttcgccttcctctcaagcaacgacttcctatccttat |
404 |
Q |
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| T |
42219514 |
ttctgcataatatcttcagcaccaaacttagtacccttctccttatcagcggcagcacgtcccttcgccttcctctcaagcaacgacttcctatccttat |
42219613 |
T |
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| Q |
405 |
ccaatctc |
412 |
Q |
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|||||||| |
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| T |
42219614 |
ccaatctc |
42219621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 42219246 - 42219309
Alignment:
| Q |
15 |
tcaatcaaaagtatcgaccctagagaggtctcaaccctaaatttcttttcttttcacaacattg |
78 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42219246 |
tcaatcaaaagtatcgaccctagagaggtctcaaccctaaatttcttttcttttcacaacattg |
42219309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 5404613 - 5404513
Alignment:
| Q |
308 |
tgcataatatcttcagcaccaaacttagtacccttctccttatcagcggcagcacgtcccttcgccttcctctcaagcaacgacttcctatccttatcca |
407 |
Q |
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| T |
5404613 |
tgcataatgtcttcaggagcaaacttggtacccttttccttatcagcagcagcacgacccttcgccttacgatcaagcaagcttttcctatccttgtcca |
5404514 |
T |
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| Q |
408 |
a |
408 |
Q |
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| T |
5404513 |
a |
5404513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 411
Target Start/End: Original strand, 3085237 - 3085342
Alignment:
| Q |
306 |
tctgcataatatcttcagcaccaaacttagtacccttctccttatcagcggcagcacgtcccttcgccttcctctcaagcaacgacttcctatccttatc |
405 |
Q |
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||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||| ||||| ||||| | ||||| | |||||| | ||||||||| |
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| T |
3085237 |
tctgcataatatcctcaggagcaaacttagtacccttctccttatcagcagcagcacgacccttagccttacgatcaagaagcgacttacgatccttatc |
3085336 |
T |
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| Q |
406 |
caatct |
411 |
Q |
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|||||| |
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| T |
3085337 |
caatct |
3085342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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