View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12600_low_19 (Length: 379)
Name: NF12600_low_19
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 39112196 - 39111836
Alignment:
| Q |
1 |
tgcccttcaagaaaatgacgatggaattctttccaatgcagactttcagaggaacaaggaaataaaggtttgttcacctcttattcagtaagctaacttt |
100 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39112196 |
tgccctgccagaaaatgaagatggaattctttccaatgcagactttcagaggatcaaggaactaaaggtttgttcacctcttattcagtaagctaaattt |
39112097 |
T |
|
| Q |
101 |
ataccttctgtaacttttatgttgaatttgtttactttatttaatttataggccaaaaacgaagcaagaactgcattagcacagcatgggcttttaaagt |
200 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39112096 |
ataacttttgtaacttttatgttgaatttgtttacttca----atttataggccaaaaacgaagcaagaactgcattagcacagcatgggcttttaaagt |
39112001 |
T |
|
| Q |
201 |
catcaacaaataagattccaagctctgatcaactaggtttaaagcgagtggatggttccatgcttgaagtaagtagctctgacttgtttaaattgatctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39112000 |
catcaacaaataagattccaagctctgatcaactaggtttaaagcgagtggatggttccatgcttgaagtaagtagctctgacttgtttaaattgatctc |
39111901 |
T |
|
| Q |
301 |
tagatgatctttatcttcaatccatgacaaaaagagaaaacacgggcaatcaaatttacttattt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39111900 |
tagatgatctttatcttcaatccatgacaaaaagagaaaacaagggcaatcaaatttacttattt |
39111836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University