View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12600_low_2 (Length: 730)
Name: NF12600_low_2
Description: NF12600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12600_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 44227429 - 44227272
Alignment:
| Q |
88 |
ataccatattatgaaactgaaaaa-tgaaatgattttgcttaagtgctcaactgattacaaagctatttatagctaattgcatgtgtaccataacatact |
186 |
Q |
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| T |
44227429 |
ataccatattatgaaactgaaaaaatgaaatgattttctttaagagttcaagtaattacaaagctatatatagctaattgcaagaacaccataacatact |
44227330 |
T |
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| Q |
187 |
atgatactgctgtagtttattatgcaagaaactaaactaaagcctattacttggagct |
244 |
Q |
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| T |
44227329 |
atggttctgctgtagcttattgagcaagaaactaaactaaagcttattacttggagct |
44227272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 94 - 244
Target Start/End: Complemental strand, 44231722 - 44231571
Alignment:
| Q |
94 |
tattatgaaactgaaaaa-tgaaatgattttgcttaagtgctcaactgattacaaagctatttatagctaattgcatgtgtaccataacatactatgata |
192 |
Q |
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| T |
44231722 |
tattatgaaactgaaaaaatgaaatgattttccttaagagttcaagtaattacaaagctatatatagctcattgcaagaataccataacatactatggtt |
44231623 |
T |
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| Q |
193 |
ctgctgtagtttattatgcaagaaactaaactaaagcctattacttggagct |
244 |
Q |
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| T |
44231622 |
ctgctgtagcttattgagcaagaaactaagctacagcttattacttggagct |
44231571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 15885030 - 15885130
Alignment:
| Q |
142 |
ttacaaagctatttatagctaattgcatgtgtaccataacatactatgatactgctgtagtttattatgcaagaaactaaactaaagcctattacttgga |
241 |
Q |
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| T |
15885030 |
ttacaaggctatatatagctaaat-catgagtaccataacatactatggtactgcagtagcttattgtgcaaacaactaaactacacactcttacttgga |
15885128 |
T |
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| Q |
242 |
gc |
243 |
Q |
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| T |
15885129 |
gc |
15885130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 31356803 - 31356707
Alignment:
| Q |
148 |
agctatttatagctaattgcatgtgtaccataacatactatgatactgctgtagtttattatgcaagaaactaaactaaagcctattacttggagct |
244 |
Q |
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| T |
31356803 |
agctatatatagctaattgcaagaacaccataacatactatggtgctgctgtagcttattgagcaagaaactaaactaaagcttattacttggagct |
31356707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 31368457 - 31368397
Alignment:
| Q |
94 |
tattatgaaactgaaaaatgaaatgattttgcttaagtgctcaactgattacaaagctatt |
154 |
Q |
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| T |
31368457 |
tattatgaaactgaaaaatgaaatgattttccttaagagttcaagtaattacaaagctatt |
31368397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 642 - 678
Target Start/End: Complemental strand, 45009759 - 45009723
Alignment:
| Q |
642 |
aaactcatcccaatcatttcacattttcaagtgtatt |
678 |
Q |
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| T |
45009759 |
aaactcgtcccaatcatttcacattttcaagtgtatt |
45009723 |
T |
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